Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   CCD83_RS05015 Genome accession   NZ_CP021521
Coordinates   846855..847532 (-) Length   225 a.a.
NCBI ID   WP_002230496.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 09-292     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 841855..852532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD83_RS05000 (CCD83_05010) hflX 843441..844619 (-) 1179 WP_002230493.1 GTPase HflX -
  CCD83_RS05005 (CCD83_05015) - 844624..845904 (-) 1281 WP_002230491.1 CAP domain-containing protein -
  CCD83_RS05010 (CCD83_05020) - 846057..846782 (-) 726 WP_002230495.1 epoxyqueuosine reductase QueH -
  CCD83_RS05015 (CCD83_05025) ysxA/radC 846855..847532 (-) 678 WP_002230496.1 RadC family protein Machinery gene
  CCD83_RS12985 - 847559..847681 (+) 123 WP_255265604.1 hypothetical protein -
  CCD83_RS05020 (CCD83_05030) gshA 847655..849004 (-) 1350 WP_002230490.1 glutamate--cysteine ligase -
  CCD83_RS05025 (CCD83_05035) leuC 849264..850673 (+) 1410 WP_002230498.1 3-isopropylmalate dehydratase large subunit -
  CCD83_RS05030 (CCD83_05040) - 850770..851024 (+) 255 WP_002213442.1 hypothetical protein -
  CCD83_RS05035 (CCD83_05045) leuD 851086..851727 (+) 642 WP_002224506.1 3-isopropylmalate dehydratase small subunit -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24960.80 Da        Isoelectric Point: 5.7262

>NTDB_id=194047 CCD83_RS05015 WP_002230496.1 846855..847532(-) (ysxA/radC) [Neisseria meningitidis strain 09-292]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQEGIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=194047 CCD83_RS05015 WP_002230496.1 846855..847532(-) (ysxA/radC) [Neisseria meningitidis strain 09-292]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGGCCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCTTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTCGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGGGCATCGTCCTGTCCGACCCCGA
TACGGTTGCCGATTACCTGCGCTTTCATTTGGGACAGGAAAAAGTCGAAGTCAGCGTCGCACTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGAGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATCGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTAACGGCGCAAA
CCGTCCGTTCGTTCAGACAGCTCGGGCTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378

Multiple sequence alignment