Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A9P79_RS13425 Genome accession   NZ_CP016950
Coordinates   311398..312939 (-) Length   513 a.a.
NCBI ID   WP_240073606.1    Uniprot ID   -
Organism   Cupriavidus taiwanensis strain SWF66294     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 306398..317939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9P79_RS13405 (A9P79_13175) - 307199..308188 (+) 990 WP_240073599.1 PDR/VanB family oxidoreductase -
  A9P79_RS13410 (A9P79_13180) - 308205..309539 (+) 1335 WP_240073600.1 aromatic ring-hydroxylating dioxygenase subunit alpha -
  A9P79_RS13415 (A9P79_13185) - 309536..310036 (+) 501 WP_240073602.1 aromatic-ring-hydroxylating dioxygenase subunit beta -
  A9P79_RS13420 (A9P79_13190) - 310231..311367 (+) 1137 WP_240073604.1 porin -
  A9P79_RS13425 (A9P79_13195) comM 311398..312939 (-) 1542 WP_240073606.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A9P79_RS13430 (A9P79_13200) - 313028..313306 (-) 279 WP_012351595.1 accessory factor UbiK family protein -
  A9P79_RS13435 (A9P79_13205) - 313696..314478 (+) 783 WP_115705669.1 TorF family putative porin -
  A9P79_RS13440 (A9P79_13210) - 314531..314869 (+) 339 WP_010814843.1 P-II family nitrogen regulator -
  A9P79_RS13445 (A9P79_13215) - 314902..316461 (+) 1560 WP_240073607.1 ammonium transporter -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 54309.41 Da        Isoelectric Point: 8.4289

>NTDB_id=193945 A9P79_RS13425 WP_240073606.1 311398..312939(-) (comM) [Cupriavidus taiwanensis strain SWF66294]
MSLAVLRSRALTGIAAPPVRVETHLANGLPAFTIVGLADTGVRESRERVRAAILNSGYEFPNRRITVNLAPADLPKESGR
FDLAIALGILAASGQIPADALDTHEFAAELSLSGELRPVRGALAMAMGLARDNAARAGSGEAPRAFLVAAGNGAEAALIE
DLAVHAAATLRQACDHLGPVTEARLPRAMPPLLPVATGRGPDMCEVRGQAQARRAMEVAAAGQHSVLLVGPPGTGKSMLA
QRLPGLLPPMSLQQALEAAAVMSLTPGGFRAEAWGVRPCRAPHHTASGPAMVGGGGNPRPGEISLAHHGVLFLDELPEFD
RRVLEVLREPLESGRITIARANGHADFPACFQFVAAMNPCPCGYLGHPDRPCRCTPDQVRRYQSRISGPMLDRIDLQVEV
PAQDQGEMLDGPPGEPSAAVRARVLAARERQLARQGKPNNELGGREIEQHCAMDPQAQALLRGAMTRLAWSARSYFRVLK
VARTIADLAGADLLNAAHVGEAIQYRRALRMAG

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=193945 A9P79_RS13425 WP_240073606.1 311398..312939(-) (comM) [Cupriavidus taiwanensis strain SWF66294]
ATGAGCCTTGCCGTCCTACGCAGCCGGGCCCTGACCGGCATCGCCGCGCCGCCGGTGCGGGTCGAGACCCACCTGGCCAA
CGGCCTGCCGGCCTTCACCATCGTCGGCCTGGCCGACACCGGCGTGCGCGAAAGCCGCGAGCGCGTGCGCGCCGCCATCC
TCAACAGCGGCTACGAGTTTCCCAACCGCCGCATCACCGTCAACCTGGCGCCGGCCGACCTGCCCAAGGAGTCCGGCCGC
TTCGACCTGGCCATTGCGCTGGGCATCCTGGCCGCCAGCGGCCAGATCCCGGCCGACGCGCTGGACACGCATGAATTTGC
CGCCGAGCTGTCGCTGTCGGGCGAGCTGCGCCCGGTGCGCGGTGCGCTGGCCATGGCGATGGGGCTGGCGCGCGACAACG
CCGCCCGCGCCGGCTCGGGCGAGGCGCCGCGTGCCTTCCTGGTCGCCGCCGGCAACGGTGCCGAAGCCGCGCTGATCGAA
GACCTGGCGGTGCACGCCGCCGCCACGCTGCGCCAGGCTTGCGACCACCTCGGCCCCGTGACCGAGGCGCGGTTGCCCCG
CGCCATGCCGCCCCTGCTGCCCGTCGCCACCGGGCGCGGCCCCGACATGTGCGAAGTCCGCGGCCAGGCGCAGGCGCGCC
GGGCCATGGAGGTGGCGGCCGCCGGCCAGCATTCGGTGCTGCTGGTGGGCCCGCCCGGCACCGGCAAGTCGATGCTGGCC
CAGCGCCTGCCCGGCCTGCTGCCGCCGATGTCGCTGCAGCAGGCGCTGGAAGCCGCCGCCGTGATGAGCCTGACCCCGGG
CGGCTTCCGCGCCGAGGCCTGGGGCGTGCGCCCGTGCCGCGCGCCGCACCACACCGCGTCCGGCCCGGCCATGGTCGGCG
GCGGCGGCAATCCGCGCCCGGGCGAGATCTCGCTCGCGCACCACGGCGTGCTGTTCCTGGACGAGCTGCCCGAGTTTGAC
CGCCGCGTGCTCGAAGTCCTGCGCGAGCCGCTGGAATCGGGCCGCATCACCATCGCTCGCGCCAACGGCCACGCCGACTT
CCCCGCCTGCTTCCAGTTCGTGGCGGCGATGAACCCCTGCCCGTGCGGCTACCTCGGCCACCCCGACCGGCCGTGCCGCT
GCACGCCCGACCAGGTGCGCCGCTACCAGTCGCGCATCTCCGGCCCGATGCTGGACCGCATCGACCTGCAGGTCGAGGTG
CCCGCGCAGGACCAGGGCGAAATGCTCGACGGCCCACCCGGCGAGCCCAGCGCCGCGGTGCGCGCGCGCGTGCTGGCCGC
GCGCGAGCGGCAGCTGGCCCGGCAGGGCAAGCCCAACAATGAACTGGGCGGACGCGAGATCGAGCAGCACTGCGCCATGG
ACCCCCAGGCGCAAGCCTTGCTGCGCGGCGCGATGACACGGCTGGCGTGGTCGGCGCGCTCGTACTTCCGCGTGCTGAAG
GTGGCGCGCACCATTGCCGACCTGGCCGGCGCCGACCTGCTGAATGCGGCGCACGTGGGCGAAGCAATCCAGTACCGGCG
CGCGCTGCGCATGGCTGGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-407)

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.781

99.805

0.507
  comM Vibrio campbellii strain DS40M4

49.805

99.805

0.497
  comM Haemophilus influenzae Rd KW20

48.256

100

0.485
  comM Legionella pneumophila strain ERS1305867

48.538

100

0.485
  comM Legionella pneumophila str. Paris

48.538

100

0.485
  comM Glaesserella parasuis strain SC1401

47.481

100

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.775

100

0.433

Multiple sequence alignment