Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ATE40_RS18590 | Genome accession | NZ_CP016948 |
| Coordinates | 3971655..3972185 (-) | Length | 176 a.a. |
| NCBI ID | WP_004936793.1 | Uniprot ID | A0AAW6X7L8 |
| Organism | Serratia surfactantfaciens strain YD25 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3966655..3977185
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ATE40_RS18560 (ATE40_018560) | - | 3967278..3967949 (-) | 672 | WP_019453200.1 | HAD family hydrolase | - |
| ATE40_RS18565 (ATE40_018565) | - | 3967946..3968176 (-) | 231 | WP_025160132.1 | tautomerase family protein | - |
| ATE40_RS18570 (ATE40_018570) | - | 3968185..3969018 (-) | 834 | WP_019453202.1 | hypothetical protein | - |
| ATE40_RS18575 (ATE40_018575) | - | 3969011..3969805 (-) | 795 | WP_019453203.1 | AfsA-related hotdog domain-containing protein | - |
| ATE40_RS18580 (ATE40_018580) | - | 3969821..3970435 (-) | 615 | WP_063918674.1 | hypothetical protein | - |
| ATE40_RS18585 (ATE40_018585) | - | 3970680..3971594 (+) | 915 | WP_025921000.1 | LysR family transcriptional regulator | - |
| ATE40_RS18590 (ATE40_018590) | ssb | 3971655..3972185 (-) | 531 | WP_004936793.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| ATE40_RS18595 (ATE40_018595) | uvrA | 3972463..3975291 (+) | 2829 | WP_019453206.1 | excinuclease ABC subunit UvrA | - |
| ATE40_RS18600 (ATE40_018600) | - | 3975655..3976461 (+) | 807 | WP_063918750.1 | MipA/OmpV family protein | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 18808.71 Da Isoelectric Point: 5.2358
>NTDB_id=193935 ATE40_RS18590 WP_004936793.1 3971655..3972185(-) (ssb) [Serratia surfactantfaciens strain YD25]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=193935 ATE40_RS18590 WP_004936793.1 3971655..3972185(-) (ssb) [Serratia surfactantfaciens strain YD25]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAAGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCTCCCTGCAGACGCGTAAATGGCAGGATCAGAGCGGCCAGGATCGTTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGTTGGGCGGCCGCCAGGGCGGCGGCGCACCGGCCGGTCAGTCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGTCCGGCGCAGAACAGCGCACCG
GCGACCAGCAACGAACCGCCAATGGATTTCGACGACGATATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAAGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCTCCCTGCAGACGCGTAAATGGCAGGATCAGAGCGGCCAGGATCGTTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGTTGGGCGGCCGCCAGGGCGGCGGCGCACCGGCCGGTCAGTCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGTCCGGCGCAGAACAGCGCACCG
GCGACCAGCAACGAACCGCCAATGGATTTCGACGACGATATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
76.243 |
100 |
0.784 |
| ssb | Glaesserella parasuis strain SC1401 |
59.14 |
100 |
0.625 |
| ssb | Neisseria meningitidis MC58 |
46.591 |
100 |
0.466 |
| ssb | Neisseria gonorrhoeae MS11 |
46.591 |
100 |
0.466 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.158 |
100 |
0.364 |