Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D083_RS10785 Genome accession   NZ_CP016928
Coordinates   2518176..2519702 (+) Length   508 a.a.
NCBI ID   WP_022635282.1    Uniprot ID   A0AAV3K9X9
Organism   Dickeya solani RNS 08.23.3.1.A     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2513176..2524702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D083_RS10760 (D083_2273) ilvE 2513367..2514293 (-) 927 WP_022635278.1 branched-chain-amino-acid transaminase -
  D083_RS10765 (D083_2274) ilvM 2514318..2514575 (-) 258 WP_022635279.1 acetolactate synthase 2 small subunit -
  D083_RS10770 (D083_2275) ilvG 2514593..2516239 (-) 1647 WP_022635280.1 acetolactate synthase 2 catalytic subunit -
  D083_RS10775 ilvL 2516379..2516477 (-) 99 WP_071526243.1 ilv operon leader peptide -
  D083_RS10780 (D083_2276) - 2516617..2517831 (-) 1215 WP_022635281.1 MFS transporter -
  D083_RS10785 (D083_2277) comM 2518176..2519702 (+) 1527 WP_022635282.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D083_RS10790 (D083_2278) - 2519765..2520103 (-) 339 WP_022635283.1 DUF413 domain-containing protein -
  D083_RS10795 (D083_2279) hdfR 2520223..2521047 (+) 825 WP_022635284.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55397.99 Da        Isoelectric Point: 7.3824

>NTDB_id=193789 D083_RS10785 WP_022635282.1 2518176..2519702(+) (comM) [Dickeya solani RNS 08.23.3.1.A]
MTLAVTYTRATIGMQAPEVLIEVHISNGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIAGEKLAQYEFLGELGLSGSLRGVHGAIPAAMEAQKAGRGLILPEDNKMEITLVPHGDALLANHL
LQVCAFLQGETPLLRGNDITPETPANTPIADLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLPGLLPPLD
DEEALESAAINSLIDIQPSLSQWRNRPFRSPHHTASITALVGGGGLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIVISRTRAKVCYPARFQLVAAMNPSPSGHYQGIHNRMPAQQILRYLNRLSGPFLDRFDLSIEVPLLPPGILRQQTR
IGEDSATVRERVFEARKRQLARIGRINAHMKSDDIACHCRLKSEDAAYLEEVMSKLGLSVRAWHRILKVSRTIADLGGED
QIHRTHLSEALSYRCMDRLLIQLHKSLA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=193789 D083_RS10785 WP_022635282.1 2518176..2519702(+) (comM) [Dickeya solani RNS 08.23.3.1.A]
ATGACACTGGCTGTGACCTACACACGAGCCACCATCGGTATGCAGGCGCCCGAGGTTTTGATCGAAGTGCATATCAGTAA
TGGCTTGCCTGCACTGACACTGGTCGGTTTACCGGAAACCACGGTCAAAGAAGCGCGAGATCGGGTGCGCAGCGCCCTGA
TCAATTGTGGCTTCACCTTTCCCGCCAAGCGGATTACCGTCAACCTGGCGCCTGCGGACCTGCCGAAAGAAGGCGGACGA
TATGACCTCCCCATCGCCCTGGCCATTCTGGCAGCCTCAGAACAGATTGCCGGTGAGAAACTTGCACAGTATGAGTTCCT
CGGTGAACTCGGGCTGTCAGGCAGCCTGAGAGGCGTTCATGGCGCTATTCCGGCGGCGATGGAAGCGCAAAAAGCTGGCC
GGGGGTTGATTCTGCCGGAAGACAACAAAATGGAAATCACGCTGGTTCCGCATGGCGATGCGCTACTGGCTAATCACCTG
CTGCAGGTCTGTGCCTTTTTGCAAGGCGAAACGCCGTTGCTGCGCGGCAACGATATTACGCCTGAAACACCAGCCAATAC
GCCGATAGCGGACCTGAAGGACATCATCGGTCAGGAACAAGCCAAACGCGCACTGGAAATTGCGGCAGCAGGCGGACATA
ACCTGCTATTACTCGGTCCACCGGGCACCGGCAAAACCATGCTGGCCAGTCGTCTGCCCGGTTTGTTGCCGCCGCTTGAT
GACGAGGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTGATTGATATTCAGCCCAGCCTGTCGCAATGGCGTAACCGGCC
ATTTCGTTCGCCTCACCACACCGCATCCATTACTGCGCTGGTCGGCGGCGGCGGATTGCCCAAACCTGGCGAGATCTCGC
TGGCACATAATGGTGTGCTGTTTCTGGATGAATTGCCGGAATTTGAACGACGGGTACTGGACTCGCTGCGGGAACCGCTG
GAATCAGGTGAAATTGTGATTTCTCGTACCCGCGCCAAGGTCTGTTATCCCGCCCGTTTTCAGTTAGTGGCCGCCATGAA
TCCCAGTCCATCAGGACACTATCAGGGTATCCATAACCGTATGCCGGCACAGCAAATCCTGCGCTACCTCAACCGGCTCT
CCGGTCCCTTTCTGGATCGTTTTGATTTATCCATTGAGGTGCCATTGCTGCCTCCCGGCATTCTTCGCCAGCAAACACGT
ATTGGCGAGGACAGCGCAACCGTACGGGAGCGGGTATTTGAAGCCAGAAAACGGCAGTTAGCCCGCATCGGCAGAATCAA
CGCGCACATGAAATCGGATGACATCGCCTGTCACTGTCGGTTGAAGAGCGAGGATGCAGCGTACCTGGAGGAGGTGATGA
GCAAATTAGGGCTGTCGGTCAGAGCCTGGCACCGGATACTGAAAGTCTCGCGCACGATTGCCGACCTGGGAGGAGAAGAT
CAGATTCATCGTACTCATTTGTCGGAAGCGCTCAGCTATCGTTGTATGGATCGCCTGCTAATTCAGCTACACAAGAGCCT
GGCATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.636

99.606

0.634
  comM Glaesserella parasuis strain SC1401

63.314

99.803

0.632
  comM Vibrio cholerae strain A1552

62.624

99.016

0.62
  comM Vibrio campbellii strain DS40M4

60.947

99.803

0.608
  comM Legionella pneumophila str. Paris

52.209

98.031

0.512
  comM Legionella pneumophila strain ERS1305867

52.209

98.031

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.838

99.606

0.467

Multiple sequence alignment