Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BFG52_RS15610 Genome accession   NZ_CP016895
Coordinates   3523798..3525288 (+) Length   496 a.a.
NCBI ID   WP_067559649.1    Uniprot ID   -
Organism   Acinetobacter larvae strain BRTC-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3518798..3530288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFG52_RS15585 (BFG52_15585) ribD 3519198..3520283 (-) 1086 WP_067558324.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  BFG52_RS15590 (BFG52_15590) nrdR 3520313..3520786 (-) 474 WP_067558327.1 transcriptional regulator NrdR -
  BFG52_RS15595 (BFG52_15595) - 3520963..3522399 (-) 1437 WP_067558330.1 ammonium transporter -
  BFG52_RS15600 (BFG52_15600) glnK 3522465..3522803 (-) 339 WP_067558332.1 P-II family nitrogen regulator -
  BFG52_RS15605 (BFG52_15605) - 3523413..3523664 (+) 252 WP_067558336.1 accessory factor UbiK family protein -
  BFG52_RS15610 (BFG52_15610) comM 3523798..3525288 (+) 1491 WP_067559649.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BFG52_RS15615 (BFG52_15615) - 3525414..3526310 (-) 897 WP_067558339.1 LysR family transcriptional regulator -
  BFG52_RS15620 (BFG52_15620) - 3526428..3526826 (+) 399 WP_067558342.1 serine hydrolase -
  BFG52_RS15625 (BFG52_15625) - 3526823..3527986 (+) 1164 WP_067558345.1 MFS transporter -
  BFG52_RS15630 (BFG52_15630) - 3528161..3529012 (-) 852 WP_407639223.1 DMT family transporter -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54619.44 Da        Isoelectric Point: 7.8384

>NTDB_id=193508 BFG52_RS15610 WP_067559649.1 3523798..3525288(+) (comM) [Acinetobacter larvae strain BRTC-1]
MSFAKIFTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGYQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIATGQLPENCTDQYEFIGELALDGHLRSVSGTLSIAMACKASGHQLFLSQQNAAEAAQLPHMQVYAAEHL
KQVCAHFLSEQHIAPTIVDSPSSVLNYRFDLADVKGQRRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLTE
QENLEVASIYSIANHHHPFGERPFRAPHHTASAIALVGGGSHPKPGEITLAHLGILFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSSEAIKRYQNRISGPLLDRIDLHINVPPLKAHELQDTRPVE
DSATVRERVTQAYHLQLQRQNQLNHSLSPKQLEQYVPLDHATEQSLSLAQQRLKLSARAYHRILRVARTIADLEQSVNIT
TQHLSEALSYRSNDLA

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=193508 BFG52_RS15610 WP_067559649.1 3523798..3525288(+) (comM) [Acinetobacter larvae strain BRTC-1]
ATGTCTTTTGCCAAAATTTTTACCCGAGGTCTGTTGGGCTTACATGCCCCCTTAATAGAAGTAGAAGTGCATGTCAGTCA
AGGTCTGCCGTCCTTGACCATTGTTGGGCTTGCCGAAGCGGCAGTACGTGAAAGCAAAGACCGTGTACGTTCTGCCATTA
TCAATAGCGGTTATCAGTTTCCGACCAAACGCCTGACCATTAATCTTGCACCCGCAGACCTCCCCAAAGATGGCTCACGT
CTCGATCTCCCGATTGCCTTGGGTATTCTCATCGCCACAGGACAGTTACCGGAAAACTGTACCGATCAATATGAATTCAT
TGGTGAACTCGCTCTCGATGGCCATTTGCGCTCTGTTTCCGGCACGCTCAGTATTGCTATGGCATGCAAAGCATCGGGGC
ATCAATTATTCTTGTCACAGCAAAATGCTGCTGAAGCTGCGCAACTGCCGCATATGCAAGTTTATGCCGCTGAACATCTC
AAACAAGTTTGCGCACATTTCTTGTCAGAACAGCATATTGCCCCCACTATTGTCGACAGTCCGAGTAGCGTGCTGAATTA
TCGTTTTGATTTAGCCGATGTTAAGGGACAAAGACGACCGCGTCGTGCCTTAGAAATCGCCGCGGCAGGTGGACATTCCT
TATTATTTAAAGGTCCGCCAGGCACAGGAAAAACCTTATTGGCTTCACGGCTTCCCAGTATATTACCGCCCTTAACTGAA
CAAGAAAATTTAGAAGTAGCCAGTATTTATTCGATTGCCAATCATCATCATCCTTTTGGTGAGCGTCCGTTTCGTGCACC
ACATCATACCGCCTCAGCCATTGCCTTAGTTGGTGGTGGCTCACATCCCAAACCTGGTGAAATTACTTTGGCACATTTGG
GTATTTTATTTTTGGATGAATTACCCGAATTTGACCGTAAGGTTTTGGAGGTATTACGACAGCCCTTAGAATCCAAAGAA
ATTGTGATTTCTAGAGCCTCAAGGCAAATTACTTTTCCTGCCAATTTTCAGTTAATCGCGGCAATGAACCCCTGCCCATG
TGGTTATGCATTCAATCAGGATAGTCGCTGCCAATGTTCCAGTGAAGCCATTAAGCGCTATCAAAATCGTATTTCAGGAC
CGCTGTTAGACCGAATCGATTTACATATCAATGTGCCACCGCTTAAAGCACATGAACTACAAGATACCCGCCCAGTCGAA
GACTCAGCCACAGTACGTGAGCGTGTTACACAAGCCTATCATCTACAATTACAGCGTCAAAACCAGCTCAATCATAGTCT
TAGCCCTAAACAACTGGAACAATATGTGCCACTCGATCATGCGACAGAGCAGTCTCTGAGCTTGGCCCAGCAACGGTTAA
AGCTCTCTGCGCGTGCCTACCATCGCATACTCAGAGTCGCGCGTACTATTGCAGATTTAGAACAATCTGTGAATATCACC
ACGCAGCATCTCAGTGAGGCTTTGTCCTATCGTAGTAACGACTTAGCCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.6

100

0.51
  comM Legionella pneumophila str. Paris

50.301

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.301

100

0.506
  comM Haemophilus influenzae Rd KW20

50.1

100

0.506
  comM Glaesserella parasuis strain SC1401

49.503

100

0.502
  comM Vibrio campbellii strain DS40M4

49.799

100

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.535

100

0.474

Multiple sequence alignment