Detailed information NTG0193289

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: BEN15_RS02230
• Genome accession: NZ_CP016877
• Coordinates: 438896..439333 (-)
• Length: 145 a.a.
• NCBI ID: WP_014608742.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain KLDS 3.1003
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 433896..444333

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BEN15_RS02190 (BEN15_02195)	-	433960..434622 (-)	663	WP_014727719.1	CPBP family intramembrane glutamic endopeptidase	-
BEN15_RS02195 (BEN15_02200)	-	434719..435162 (-)	444	WP_011681680.1	hypothetical protein	-
BEN15_RS11515 (BEN15_02205)	-	435236..435661 (-)	426	WP_014608739.1	CPBP family intramembrane glutamic endopeptidase	-
BEN15_RS11520 (BEN15_02210)	-	435618..435893 (-)	276	WP_011681681.1	hypothetical protein	-
BEN15_RS02210 (BEN15_02215)	-	435905..436102 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
BEN15_RS02215 (BEN15_02220)	-	436351..437544 (-)	1194	WP_014608740.1	acetate kinase	-
BEN15_RS02220 (BEN15_02225)	comYH	437600..438556 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
BEN15_RS02225 (BEN15_02230)	comGG	438601..438918 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
BEN15_RS02230 (BEN15_02235)	comYF	438896..439333 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
BEN15_RS02235 (BEN15_02240)	comGE	439317..439610 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
BEN15_RS02240 (BEN15_02245)	comYD	439582..440010 (-)	429	WP_257608452.1	competence type IV pilus minor pilin ComGD	Machinery gene
BEN15_RS02245 (BEN15_02250)	comYC	439970..440296 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
BEN15_RS02250 (BEN15_02255)	comYB	440293..441393 (-)	1101	WP_142350125.1	competence type IV pilus assembly protein ComGB	Machinery gene
BEN15_RS02255 (BEN15_02260)	comGA/cglA/cilD	441275..442216 (-)	942	WP_065972616.1	competence type IV pilus ATPase ComGA	Machinery gene
BEN15_RS02260 (BEN15_02265)	-	442296..442658 (-)	363	WP_014622006.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16505.05 Da
• Isoelectric Point: 8.9784

>NTDB_id=193289 BEN15_RS02230 WP_014608742.1 438896..439333(-) (comYF) [Streptococcus thermophilus strain KLDS 3.1003]
MYLSSKLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEWNKLYVKKD
NQDLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNELQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=193289 BEN15_RS02230 WP_014608742.1 438896..439333(-) (comYF) [Streptococcus thermophilus strain KLDS 3.1003]
ATGTATCTAAGCAGTAAGCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTGAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGATTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGTGGAACAAACTCTATGTCAAGAAGGAT
AATCAAGACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGATGGTCGAGGTTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGAACTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.865	97.241	0.572
comYF	Streptococcus mutans UA159	58.156	97.241	0.566
comGF/cglF	Streptococcus pneumoniae D39	47.857	96.552	0.462
comGF/cglF	Streptococcus pneumoniae Rx1	47.857	96.552	0.462
comGF/cglF	Streptococcus pneumoniae R6	47.857	96.552	0.462
comGF/cglF	Streptococcus pneumoniae TIGR4	47.857	96.552	0.462
comGF/cglF	Streptococcus mitis NCTC 12261	46.099	97.241	0.448
comGF/cglF	Streptococcus mitis SK321	45.39	97.241	0.441
comGF	Lactococcus lactis subsp. cremoris KW2	46.043	95.862	0.441