Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BE842_RS13900 Genome accession   NZ_CP016870
Coordinates   3111593..3113104 (-) Length   503 a.a.
NCBI ID   WP_011214811.1    Uniprot ID   Q5WYW1
Organism   Legionella pneumophila subsp. pneumophila strain FFI103     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3106593..3118104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE842_RS13870 (BE842_13870) - 3107141..3107812 (-) 672 WP_011214805.1 TIGR00153 family protein -
  BE842_RS13875 (BE842_13875) - 3108000..3108764 (+) 765 WP_011214806.1 hypothetical protein -
  BE842_RS13880 (BE842_13880) - 3109067..3109630 (+) 564 WP_011214807.1 YqgE/AlgH family protein -
  BE842_RS13885 (BE842_13885) ruvX 3109623..3110042 (+) 420 WP_011214808.1 Holliday junction resolvase RuvX -
  BE842_RS13890 (BE842_13890) - 3110092..3110985 (+) 894 WP_011214809.1 aspartate carbamoyltransferase catalytic subunit -
  BE842_RS13895 (BE842_13895) - 3111099..3111482 (-) 384 WP_011214810.1 hypothetical protein -
  BE842_RS13900 (BE842_13900) comM 3111593..3113104 (-) 1512 WP_011214811.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BE842_RS13905 (BE842_13905) ubiK 3113176..3113430 (-) 255 WP_011214812.1 ubiquinone biosynthesis accessory factor UbiK -
  BE842_RS13910 (BE842_13910) - 3113575..3113913 (+) 339 WP_011213200.1 P-II family nitrogen regulator -
  BE842_RS13915 (BE842_13915) - 3113923..3114504 (-) 582 WP_011214813.1 5-formyltetrahydrofolate cyclo-ligase -
  BE842_RS13920 (BE842_13920) - 3114751..3114936 (+) 186 WP_010946331.1 PA3496 family putative envelope integrity protein -
  BE842_RS13925 (BE842_13925) - 3114950..3115765 (+) 816 WP_010946332.1 aminotransferase class IV -
  BE842_RS13930 (BE842_13930) - 3115792..3116475 (-) 684 WP_011214814.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54939.52 Da        Isoelectric Point: 8.3824

>NTDB_id=193103 BE842_RS13900 WP_011214811.1 3111593..3113104(-) (comM) [Legionella pneumophila subsp. pneumophila strain FFI103]
MNLAFTKTRSTIGIVAQPVSVEVHLSNGLPSFTMVGLAETAVKESKDRVRSAIINSQFEFPCRKITVNLGPANLPKTGSG
FDLPIALGILAASEQIPLTNLANHEFIGELALSGELRGVSAIIPAVLAAHKDNQHLIIANANAAEASLTGHPKVFTANNL
REVCDYLCQGTSLQNLPPKPDLLFNNHELDWSDIKGQHHAKNAMVIAACGGHSILLSGAPGSGKTMMAKRFSTLLPELSE
TQALECAAINSIRGKLPDFREWRLPPFRAPHHTASPVALVGGGNPPKPGEISLAHHGVLFLDELPEFNRQVLETLREPLE
SGHICISRAAAQIEFPAKFQLIAAMNPCPCGQWGNSQANCLCTPDRISRYLAKLSAPLLDRIDMQVTIHALSQEELIKPN
TRLEKQSPAIREKVTKMHEIQMARQDSLNANLNSKTCEMVCELGAEEQLFLREVMSKLKLSARGYHRLLKVGRTIADMNS
SKKVLLNHLHQALSYKQNLHLPK

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=193103 BE842_RS13900 WP_011214811.1 3111593..3113104(-) (comM) [Legionella pneumophila subsp. pneumophila strain FFI103]
ATGAATCTCGCATTTACCAAAACGCGAAGTACTATTGGTATTGTCGCACAACCAGTATCTGTGGAAGTCCATTTATCAAA
TGGATTGCCAAGTTTTACTATGGTAGGACTTGCTGAAACAGCAGTGAAAGAAAGTAAAGACCGCGTGCGCAGCGCCATTA
TAAATAGCCAATTCGAATTTCCATGCCGTAAAATTACCGTTAATCTTGGCCCTGCCAATTTACCTAAAACAGGAAGTGGC
TTTGACTTGCCTATTGCACTAGGGATACTCGCAGCATCAGAACAAATTCCTCTCACCAACCTTGCAAATCACGAATTTAT
TGGAGAATTGGCTTTAAGCGGCGAGCTTAGAGGGGTTTCTGCCATTATACCTGCTGTTCTTGCCGCTCATAAAGACAATC
AACATCTTATTATAGCGAATGCCAATGCTGCCGAAGCTTCTTTAACCGGCCACCCAAAAGTCTTTACTGCCAATAACTTA
CGCGAAGTTTGTGATTATCTATGCCAGGGTACTTCTTTACAGAACTTACCTCCCAAACCAGATCTTTTATTTAATAACCA
TGAATTGGATTGGTCTGATATTAAGGGGCAACATCATGCCAAAAATGCTATGGTCATTGCTGCCTGTGGGGGACACAGCA
TTCTGCTAAGTGGCGCGCCGGGCAGTGGAAAAACGATGATGGCAAAAAGATTTAGTACCTTGCTGCCCGAGCTATCCGAA
ACACAAGCTCTCGAATGCGCAGCCATTAATTCAATTCGAGGCAAATTACCTGATTTCAGGGAATGGCGTTTGCCTCCTTT
TCGTGCACCACATCATACTGCCTCACCTGTCGCGTTAGTCGGAGGAGGCAACCCACCAAAACCCGGTGAAATTTCATTAG
CCCATCACGGCGTATTATTTTTAGATGAATTACCTGAATTTAATCGGCAAGTATTAGAGACACTTAGAGAACCTTTAGAG
TCAGGGCATATTTGCATTTCCAGAGCAGCTGCACAAATAGAGTTTCCTGCCAAATTTCAATTAATTGCAGCAATGAATCC
TTGCCCTTGTGGCCAATGGGGTAATTCACAAGCCAATTGCTTATGTACTCCTGATAGAATCAGCCGCTATTTGGCAAAAC
TTTCTGCTCCATTATTAGATAGAATCGATATGCAGGTTACAATTCACGCATTATCTCAAGAGGAGTTAATTAAACCCAAT
ACCCGTTTAGAAAAACAAAGTCCTGCTATTAGAGAAAAGGTAACAAAGATGCATGAAATACAAATGGCACGACAAGATAG
CCTCAATGCCAATTTAAATTCCAAAACATGCGAAATGGTTTGCGAATTGGGAGCAGAAGAACAATTGTTTCTCCGAGAAG
TGATGAGTAAACTGAAACTGTCTGCTCGCGGTTACCATCGCTTACTAAAAGTAGGAAGAACCATTGCTGATATGAATAGC
AGTAAGAAAGTTCTGCTAAATCACTTACATCAGGCTTTATCTTACAAACAAAATTTACACTTACCAAAATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5WYW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

97.614

100

0.976
  comM Legionella pneumophila strain ERS1305867

97.614

100

0.976
  comM Haemophilus influenzae Rd KW20

50

100

0.505
  comM Vibrio cholerae strain A1552

50.806

98.608

0.501
  comM Vibrio campbellii strain DS40M4

50.402

99.006

0.499
  comM Glaesserella parasuis strain SC1401

47.61

99.801

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.339

98.608

0.417

Multiple sequence alignment