Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BFC21_RS19585 Genome accession   NZ_CP016849
Coordinates   4143918..4145411 (-) Length   497 a.a.
NCBI ID   WP_120266438.1    Uniprot ID   A0A494R9U3
Organism   Pseudomonas sp. TMW 2.1634     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4138918..4150411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFC21_RS19565 (BFC21_18840) - 4139641..4141308 (+) 1668 WP_088378689.1 bifunctional diguanylate cyclase/phosphodiesterase -
  BFC21_RS19575 (BFC21_18845) - 4141435..4142835 (-) 1401 WP_088378690.1 NorM family multidrug efflux MATE transporter -
  BFC21_RS19580 (BFC21_18850) - 4142988..4143908 (+) 921 WP_088378691.1 LysR substrate-binding domain-containing protein -
  BFC21_RS19585 (BFC21_18855) comM 4143918..4145411 (-) 1494 WP_120266438.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BFC21_RS19590 - 4145588..4145867 (+) 280 Protein_3759 type II toxin-antitoxin system RelE/ParE family toxin -
  BFC21_RS19595 (BFC21_18860) - 4145875..4146180 (+) 306 WP_088378693.1 HigA family addiction module antitoxin -
  BFC21_RS19600 (BFC21_18865) - 4146182..4146610 (-) 429 WP_088378694.1 VOC family protein -
  BFC21_RS19605 (BFC21_18870) - 4146657..4146917 (-) 261 WP_088378695.1 accessory factor UbiK family protein -
  BFC21_RS19610 (BFC21_18875) glnK 4147335..4147673 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  BFC21_RS19615 (BFC21_18880) - 4147707..4149044 (+) 1338 WP_088378696.1 ammonium transporter -
  BFC21_RS19620 (BFC21_18885) sutA 4149526..4149852 (+) 327 WP_088378697.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53053.44 Da        Isoelectric Point: 8.3574

>NTDB_id=192720 BFC21_RS19585 WP_120266438.1 4143918..4145411(-) (comM) [Pseudomonas sp. TMW 2.1634]
MALAIVYSRAQVGVEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAIINSTLDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPAVALEQVECLGELALSGAIRPVQGILPAALAARAAGRTLVVPLANAEEACLACGLTVIAAEHL
LQVVAHFAGREMIAPYSPSGLLHLSKPYPDLSDVQGQLSAKRALLVAAAGSHNLLFTGPPGTGKTLLASRLPGLLPPLNE
HEALEVAAIQSVASHVPLNSWPQRPFRQPHHSASGPALVGGGSKPRPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GFIVIARAKDRMRFPARFQLVAAMNPCPCGYLGEPTGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTTLNPPLAS
ADTTAKAATLVAAARERQLQRQGCANAFLDLPGVRAQCRLSDGDNHWLEAACERMTLSLRAAHRLLKVARTLADLEQVQH
IERKHLAEALQYRPLSG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=192720 BFC21_RS19585 WP_120266438.1 4143918..4145411(-) (comM) [Pseudomonas sp. TMW 2.1634]
ATGGCTCTGGCGATTGTTTACAGCCGCGCCCAGGTGGGCGTCGAGGCGCCTGCGGTGACGGTGGAGGCGCATCTGGCCAA
TGGGTTGCCGGCGTTGACGCTGGTCGGTTTACCTGAAACCGCAGTCAAGGAAAGTAAAGATCGGGTACGCAGTGCAATCA
TCAATTCCACCCTGGATTTCCCGGCCCGGCGGATCACCCTTAATCTCGCTCCCGCTGACCTGCCCAAGGACGGCGGGCGC
TTTGATCTGGCCATTGCCCTGGGCATTCTGGCGGCCAGCGGGCAACTGCCGGCAGTGGCGCTGGAGCAAGTGGAGTGTTT
GGGCGAACTGGCGCTATCGGGGGCAATCAGGCCGGTGCAGGGCATATTGCCGGCCGCCCTGGCAGCTCGCGCAGCCGGTC
GGACGCTGGTGGTGCCGCTGGCCAATGCCGAGGAAGCCTGCCTGGCCTGCGGGCTGACGGTCATCGCGGCCGAGCACTTG
TTGCAGGTGGTGGCCCATTTCGCAGGCCGGGAAATGATTGCCCCTTATAGCCCCAGCGGCTTGCTGCATCTAAGCAAGCC
CTATCCCGACCTGAGCGATGTCCAGGGCCAGCTTTCGGCCAAACGGGCGTTGCTGGTGGCCGCGGCCGGCAGTCACAACC
TGCTGTTTACCGGGCCGCCGGGCACAGGCAAAACCTTGCTGGCCAGTCGCCTGCCTGGCTTGTTGCCCCCCCTCAATGAA
CACGAGGCACTGGAAGTGGCGGCCATTCAGTCGGTGGCCAGCCATGTGCCATTGAACAGCTGGCCTCAGCGACCGTTTCG
CCAACCCCATCATTCGGCCTCCGGCCCCGCGCTGGTGGGGGGCGGTTCCAAACCCCGGCCCGGGGAAATCACCCTGGCCC
ATCACGGCGTGTTGTTTCTCGATGAACTCCCCGAGTTTGATCGCAAGGTGCTGGAAGTCTTGCGTGAACCTATGGAGAGC
GGCTTTATCGTGATTGCCCGGGCCAAGGATCGCATGCGTTTTCCGGCGCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCGTGTGGCTACCTCGGCGAACCCACAGGGCGCTGTCGCTGCACACCGGAGCAGATCCAGCGCTATCGCAACAAACTGT
CTGGCCCATTGCTCGATCGCATTGACCTGCACCTGACCGTGGCGCGTGAAACCACCACCCTCAACCCGCCACTGGCCTCA
GCTGATACCACGGCCAAGGCGGCTACGTTGGTGGCTGCGGCGCGAGAACGGCAGTTGCAACGCCAGGGCTGTGCCAATGC
CTTTCTCGACCTGCCGGGGGTGCGTGCCCAGTGCCGCTTGAGTGATGGGGATAACCACTGGCTGGAGGCTGCTTGCGAGC
GCATGACCCTGTCACTGCGGGCGGCACATCGTTTGTTGAAAGTGGCAAGGACCCTGGCAGACCTTGAGCAGGTACAACAC
ATAGAGCGCAAACATCTGGCAGAGGCGTTGCAGTATCGGCCGCTCAGTGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A494R9U3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.422

100

0.555
  comM Vibrio cholerae strain A1552

55.131

100

0.551
  comM Haemophilus influenzae Rd KW20

53.984

100

0.545
  comM Glaesserella parasuis strain SC1401

52.976

100

0.537
  comM Legionella pneumophila str. Paris

48.992

99.799

0.489
  comM Legionella pneumophila strain ERS1305867

48.992

99.799

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.071

100

0.449

Multiple sequence alignment