Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BER93_RS01565 Genome accession   NZ_CP016833
Coordinates   341722..343242 (-) Length   506 a.a.
NCBI ID   WP_002809600.1    Uniprot ID   A0A1Y6HCM1
Organism   Xanthomonas fragariae isolate Fap29     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 336722..348242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BER93_RS01545 (BER93_01545) - 337038..338162 (+) 1125 WP_002809593.1 acyl-CoA desaturase -
  BER93_RS01550 (BER93_01550) - 338368..339930 (-) 1563 WP_002809597.1 EAL domain-containing protein -
  BER93_RS21760 - 340312..340488 (+) 177 WP_002809598.1 hypothetical protein -
  BER93_RS01555 (BER93_01555) - 340793..341302 (-) 510 WP_040762726.1 lipocalin family protein -
  BER93_RS01565 (BER93_01565) comM 341722..343242 (-) 1521 WP_002809600.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BER93_RS01570 (BER93_01570) - 343258..343536 (-) 279 WP_002809601.1 accessory factor UbiK family protein -
  BER93_RS01575 (BER93_01575) - 343690..344064 (+) 375 WP_197493710.1 P-II family nitrogen regulator -
  BER93_RS01580 (BER93_01580) - 344661..346640 (+) 1980 WP_065975034.1 beta-N-acetylglucosaminidase domain-containing protein -
  BER93_RS19910 - 346800..347109 (+) 310 Protein_319 hypothetical protein -
  BER93_RS01590 (BER93_01590) - 347317..347916 (+) 600 WP_002809606.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53768.44 Da        Isoelectric Point: 8.1526

>NTDB_id=192542 BER93_RS01565 WP_002809600.1 341722..343242(-) (comM) [Xanthomonas fragariae isolate Fap29]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCAALNGTQQAPAAEVAILAPGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAAALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
VGEDSASVRARVVAARERQLARATVPNAQLDQADTDRHCRLQGDDQLLLERAIEHLQLSARSMHRILRVARTIADLDDSA
GIATRHLTEAIGYRKLDRTLSAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=192542 BER93_RS01565 WP_002809600.1 341722..343242(-) (comM) [Xanthomonas fragariae isolate Fap29]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGCCTCCCTTCCACCCAGATCGTGGGTCTGCCCGAGGCCGCGGTGCGTGAGTCGCGCGAACGCGTACGTGCGGCATTGC
TGTGCGCACAGTTCGAATTCCCGGCCCGGCGCATCACCATCAACCTGGCGCCAGCCGATTTGCCGAAGGAAGGCGGCCGC
TTCGACTTGCCGATCGCGCTCGGCATCCTGGCCGCCAGCGGGCAGATCGACCGGCAAGCGTTGGCCGACTACGAATTTCT
AGGCGAGCTTGCACTCACCGGCGAGTTACGCGGCGTCGATGGGGTGCTGCCTGCCGCTTTGGCAGCCGCGCAGGCCGGGC
GAAGGTTGATCGTGCCGCTGGCCAATGGCGCCGAAGCCGCGATCGCCGGGCATGTGGAAGCCTTCACCGCGCGCACCTTG
CTGGAAGTCTGCGCCGCACTCAACGGCACTCAGCAAGCGCCAGCGGCAGAGGTGGCGATCCTGGCGCCAGGCGCACGTGC
CCTACCGGATATGGCCGATGTGCGCGGCCAACCGCATGCGCGTCGCGCGTTGGAGATTGCCGCAGCAGGAGGTCACCACC
TGCTGCTGGTCGGCAGCCCCGGGTGCGGCAAGACCTTGCTCGCCTCACGCCTGCCTGGGCTGCTGCCGGAAGCCAGCGAA
GCCGAAGCGCTGGAGACTGCCGCCATCACCTCGATCAGCGGCCGCGGGCTGGATCTCGCCCGCTGGCGACAGCGGCCCTA
TCGCGCGCCCCATCACACCGCCAGTGCGGCCGCTTTGGTCGGTGGTGGCACCCATCCGCGTCCCGGCGAGATCTCCCTGG
CCCACAACGGCGTGCTGTTTTTGGATGAGCTGCCCGAGTGGCAACGGCAGACCTTGGAAGTGCTGCGCGAGCCGCTGGAG
TCGGGCCTAGTCACCATCTCGCGCGCTGCGCGCAGTGTGGATTTCCCGGCTCGTTTCCAACTAGTTGCTGCGATGAACCC
CTGCCCATGTGGCTGGGCCGGTGATGGCAGCGGGCGTTGCCGCTGCAGCAGCGACAGTATTCGTCGCTATCGCAGCCGTA
TCTCTGGTCCATTGCTGGACCGTATCGATCTGCATGTCGAAGTGCCGCGACTGCCGCCGCAAGCATTGCGCAGCGGCAAC
GTCGGCGAGGACAGCGCCAGCGTGCGTGCACGCGTGGTCGCAGCCCGTGAACGACAGCTTGCGCGCGCCACCGTGCCCAA
TGCGCAACTCGACCAGGCAGACACCGATCGCCACTGCCGCCTGCAGGGCGACGATCAGCTGCTGCTGGAGCGCGCGATCG
AGCATCTGCAGCTGTCCGCACGCTCGATGCACCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACAGCGCG
GGGATCGCCACGCGCCATCTGACCGAAGCGATCGGCTACCGCAAACTGGATCGCACGTTGAGCGCAGCGAGCGCGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y6HCM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.312

100

0.573
  comM Haemophilus influenzae Rd KW20

55.382

100

0.559
  comM Vibrio campbellii strain DS40M4

54.706

100

0.551
  comM Glaesserella parasuis strain SC1401

54.438

100

0.545
  comM Legionella pneumophila str. Paris

52.6

98.814

0.52
  comM Legionella pneumophila strain ERS1305867

52.6

98.814

0.52
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.866

100

0.46

Multiple sequence alignment