Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   F7310_RS09555 Genome accession   NZ_CP016796
Coordinates   2056239..2057750 (-) Length   503 a.a.
NCBI ID   WP_072713580.1    Uniprot ID   -
Organism   Francisella uliginis strain TX07-7310     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2051239..2062750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7310_RS09535 (F7310_09480) nusA 2052904..2054373 (-) 1470 WP_072713353.1 transcription termination factor NusA -
  F7310_RS09540 (F7310_09485) rimP 2054390..2054842 (-) 453 WP_072713354.1 ribosome maturation factor RimP -
  F7310_RS09550 (F7310_09495) hemE 2055071..2056105 (-) 1035 WP_072713355.1 uroporphyrinogen decarboxylase -
  F7310_RS09555 (F7310_09500) comM 2056239..2057750 (-) 1512 WP_072713580.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  F7310_RS09560 (F7310_09505) - 2057752..2057946 (-) 195 WP_072713356.1 accessory factor UbiK family protein -
  F7310_RS09565 (F7310_09510) - 2058019..2059470 (-) 1452 WP_072713357.1 NADH-quinone oxidoreductase subunit N -
  F7310_RS09570 (F7310_09515) - 2059486..2061075 (-) 1590 WP_072713358.1 complex I subunit 4 family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55358.70 Da        Isoelectric Point: 6.7683

>NTDB_id=192313 F7310_RS09555 WP_072713580.1 2056239..2057750(-) (comM) [Francisella uliginis strain TX07-7310]
MSLAILKSRAQLGIEALSVSIEVHLSNGLPGLLIVGLPEAAVKESKDRVRSAIINSGFNFPNKRITINLAPADLPKSSGR
FDLPIALGILYASGQINPSKNIEEYEFAGELSLSGELRKISSAISMAIKCVHDEKKLIIPAHNEKEIALVEDVKAYALDD
LKQVVDFLSGDMDKQKIEFETDINFDELYEDLEDVKGQYQAKRALEIAAAGGHNILLVGPPGTGKTMLASRLNSILPPLD
KKEALSSAMIASIKGESGIAESFYKRPFRHPHHTSSGVSLVGGGSNPMPGEISLAHNGVLFLDELPEFDRKVLEVLREPL
ETGIVNISRARCQVEYPANFQLIAAMNPCPCGYLGSQFKECTDSMQAIRRYQSKLSGPLLDRIDLHVEVLELSKGDLTNQ
DLRGEKSYDVRQRVEKARQIQIARQDKINAMLSSKELDQVCSLSKENKEMLSQAIEKLGLSARGYYKILKVARTIADING
SKDVDKAAIQEAISYRKMDKFIK

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=192313 F7310_RS09555 WP_072713580.1 2056239..2057750(-) (comM) [Francisella uliginis strain TX07-7310]
ATGTCATTAGCAATTTTAAAGAGTAGAGCTCAGCTTGGGATTGAAGCTCTGTCTGTTTCTATAGAAGTTCATTTATCGAA
TGGATTGCCTGGGTTATTAATTGTTGGCTTGCCTGAGGCAGCTGTTAAAGAAAGTAAAGATCGTGTCCGTAGTGCAATTA
TAAATTCAGGATTTAATTTTCCAAATAAAAGAATAACTATAAATTTAGCTCCGGCTGATTTACCTAAAAGTAGTGGGCGT
TTTGATTTGCCAATAGCTTTAGGGATTTTATATGCTTCTGGACAAATTAATCCATCAAAGAATATTGAAGAATACGAATT
TGCAGGAGAGCTATCTCTAAGTGGTGAGCTTAGAAAAATATCTAGCGCTATTTCAATGGCAATAAAATGTGTACATGATG
AAAAGAAACTAATTATCCCAGCTCACAATGAAAAAGAAATTGCACTTGTTGAAGATGTAAAAGCTTATGCTTTAGATGAT
CTTAAGCAGGTCGTTGATTTCTTGTCTGGGGATATGGATAAACAAAAAATCGAGTTTGAGACAGATATCAATTTTGATGA
GTTATACGAAGATCTGGAGGATGTTAAAGGGCAGTATCAAGCTAAGCGAGCTTTAGAGATAGCTGCTGCAGGTGGCCATA
ATATTCTTTTGGTGGGTCCTCCAGGTACCGGTAAAACAATGTTGGCAAGTAGGCTAAATTCTATTTTGCCACCACTAGAT
AAAAAAGAAGCTCTTTCATCTGCGATGATCGCATCAATTAAAGGAGAGTCTGGTATCGCAGAGAGCTTTTATAAAAGACC
GTTTAGACATCCTCATCACACTTCATCAGGAGTATCTCTAGTAGGTGGTGGAAGTAATCCAATGCCAGGTGAAATTTCTT
TGGCGCACAATGGTGTTTTGTTTCTAGATGAACTACCAGAATTTGATCGTAAAGTTTTAGAGGTTTTACGTGAGCCATTA
GAAACAGGTATAGTAAATATCTCTCGAGCAAGATGTCAGGTTGAATATCCTGCAAACTTCCAGTTAATCGCAGCAATGAA
TCCATGTCCTTGTGGTTATCTAGGATCACAGTTTAAAGAGTGTACAGATTCTATGCAGGCGATTCGTCGTTATCAGAGTA
AGCTTTCTGGGCCTCTTTTAGATAGGATTGATTTGCATGTTGAGGTTCTAGAGCTTTCTAAAGGTGATTTGACAAACCAA
GACTTACGCGGTGAAAAGAGTTATGATGTAAGGCAGAGAGTTGAAAAGGCTCGGCAGATCCAAATTGCAAGGCAAGATAA
AATCAATGCGATGTTAAGTAGTAAAGAGCTAGATCAAGTTTGTAGTTTAAGTAAGGAAAATAAAGAGATGTTATCGCAAG
CAATAGAAAAGCTCGGTTTATCAGCAAGAGGATATTATAAAATATTAAAAGTAGCTAGAACCATAGCTGATATTAATGGC
AGTAAAGATGTTGATAAAGCAGCTATACAAGAGGCGATAAGCTATAGGAAAATGGATAAGTTTATTAAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.579

100

0.527
  comM Glaesserella parasuis strain SC1401

51.969

100

0.525
  comM Vibrio campbellii strain DS40M4

52.183

100

0.523
  comM Legionella pneumophila str. Paris

52.61

99.006

0.521
  comM Legionella pneumophila strain ERS1305867

52.61

99.006

0.521
  comM Haemophilus influenzae Rd KW20

50.881

100

0.517
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

49

99.404

0.487

Multiple sequence alignment