Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   QP84_RS08575 Genome accession   NZ_CP016684
Coordinates   1665152..1665745 (+) Length   197 a.a.
NCBI ID   WP_002219444.1    Uniprot ID   -
Organism   Neisseria meningitidis strain L91543     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1660152..1670745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP84_RS08550 (QP84_008550) - 1660407..1660994 (-) 588 WP_002220670.1 superoxide dismutase -
  QP84_RS08555 (QP84_008555) dnaB 1661157..1662563 (+) 1407 WP_002220671.1 replicative DNA helicase -
  QP84_RS08560 (QP84_008560) pilH 1662872..1663540 (+) 669 WP_065818665.1 GspH/FimT family pseudopilin Machinery gene
  QP84_RS08565 (QP84_008565) pilV 1663570..1664190 (+) 621 WP_042745216.1 type IV pilus modification protein PilV Machinery gene
  QP84_RS08570 (QP84_008570) pilJ 1664187..1665173 (+) 987 WP_025458522.1 PilW family protein Machinery gene
  QP84_RS08575 (QP84_008575) pilK 1665152..1665745 (+) 594 WP_002219444.1 pilus assembly PilX family protein Machinery gene
  QP84_RS08580 (QP84_008580) pilX 1665750..1666223 (+) 474 WP_180302171.1 PilX family type IV pilin Machinery gene
  QP84_RS08585 (QP84_008585) - 1668310..1668738 (-) 429 Protein_1590 AzlC family ABC transporter permease -
  QP84_RS08590 (QP84_008590) dut 1668881..1669333 (+) 453 WP_002226436.1 dUTP diphosphatase -
  QP84_RS08595 (QP84_008595) dapC 1669409..1670596 (+) 1188 WP_042745180.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21630.44 Da        Isoelectric Point: 5.3764

>NTDB_id=191831 QP84_RS08575 WP_002219444.1 1665152..1665745(+) (pilK) [Neisseria meningitidis strain L91543]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRSCTANSTNLCIDNKGTEYKKGTQSVSKMPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=191831 QP84_RS08575 WP_002219444.1 1665152..1665745(+) (pilK) [Neisseria meningitidis strain L91543]
ATGCGCAAACAGAACGCTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCGCTGTTTATCGTGCTGATGGT
AATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCACTGCAAATTCTACCA
ACCTGTGCATTGACAATAAAGGGACGGAATATAAGAAAGGCACGCAAAGCGTCAGCAAAATGCCACGTTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

86.634

100

0.888

Multiple sequence alignment