Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   QP84_RS08570 Genome accession   NZ_CP016684
Coordinates   1664187..1665173 (+) Length   328 a.a.
NCBI ID   WP_025458522.1    Uniprot ID   -
Organism   Neisseria meningitidis strain L91543     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1659187..1670173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP84_RS08545 (QP84_008545) - 1659328..1659837 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  QP84_RS08550 (QP84_008550) - 1660407..1660994 (-) 588 WP_002220670.1 superoxide dismutase -
  QP84_RS08555 (QP84_008555) dnaB 1661157..1662563 (+) 1407 WP_002220671.1 replicative DNA helicase -
  QP84_RS08560 (QP84_008560) pilH 1662872..1663540 (+) 669 WP_065818665.1 GspH/FimT family pseudopilin Machinery gene
  QP84_RS08565 (QP84_008565) pilV 1663570..1664190 (+) 621 WP_042745216.1 type IV pilus modification protein PilV Machinery gene
  QP84_RS08570 (QP84_008570) pilJ 1664187..1665173 (+) 987 WP_025458522.1 PilW family protein Machinery gene
  QP84_RS08575 (QP84_008575) pilK 1665152..1665745 (+) 594 WP_002219444.1 pilus assembly PilX family protein Machinery gene
  QP84_RS08580 (QP84_008580) pilX 1665750..1666223 (+) 474 WP_180302171.1 PilX family type IV pilin Machinery gene
  QP84_RS08585 (QP84_008585) - 1668310..1668738 (-) 429 Protein_1590 AzlC family ABC transporter permease -
  QP84_RS08590 (QP84_008590) dut 1668881..1669333 (+) 453 WP_002226436.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 36115.02 Da        Isoelectric Point: 8.4193

>NTDB_id=191830 QP84_RS08570 WP_025458522.1 1664187..1665173(+) (pilJ) [Neisseria meningitidis strain L91543]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVPDVAQKNRLFSLKGSSANKLIPITESLNIGYPGFTQRLNALIFQYGIDDVNASADTTVVSSCAKIAK
PGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIDGEEGLFRFQLNDDGQWGNPQLLVKKINKMDIRYIYLL
VESPGIQPTNSPRYIYGCPEDDDAGKEETFRYTDKFNSAQDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGG
NICANRTL

Nucleotide


Download         Length: 987 bp        

>NTDB_id=191830 QP84_RS08570 WP_025458522.1 1664187..1665173(+) (pilJ) [Neisseria meningitidis strain L91543]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACGTCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTCCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAGG
GAGCAGTGCAAATAAACTTATCCCCATAACGGAATCTTTAAATATCGGATATCCGGGTTTTACCCAGCGCCTTAACGCAT
TGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCCAAAATAGCAAAA
CCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATAT
CACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGACGGTGAGGAAGGTTTGTTCCGCTTCCAATTGA
ATGATGATGGGCAGTGGGGCAATCCTCAGTTGTTGGTTAAAAAGATTAATAAAATGGATATACGGTATATCTATCTTCTC
GTGGAAAGTCCTGGTATACAGCCTACCAATTCTCCCCGGTATATTTACGGTTGCCCTGAAGATGACGATGCCGGCAAAGA
GGAAACATTCAGATATACGGATAAATTCAACAGCGCCCAAGATGCTGTTACGCCCGCCGGGGTGGAGGTTTTATTGAGTA
GCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATGCTTACCGTATCGATGCGACAATACGCGGGGGA
AATATATGCGCAAACAGAACGCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

74.398

100

0.753

Multiple sequence alignment