Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   QP84_RS08560 Genome accession   NZ_CP016684
Coordinates   1662872..1663540 (+) Length   222 a.a.
NCBI ID   WP_065818665.1    Uniprot ID   -
Organism   Neisseria meningitidis strain L91543     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1657872..1668540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP84_RS14805 - 1658513..1658620 (+) 108 Protein_1580 IS5/IS1182 family transposase -
  QP84_RS08540 (QP84_008540) - 1658665..1658997 (+) 333 WP_002213854.1 hypothetical protein -
  QP84_RS08545 (QP84_008545) - 1659328..1659837 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  QP84_RS08550 (QP84_008550) - 1660407..1660994 (-) 588 WP_002220670.1 superoxide dismutase -
  QP84_RS08555 (QP84_008555) dnaB 1661157..1662563 (+) 1407 WP_002220671.1 replicative DNA helicase -
  QP84_RS08560 (QP84_008560) pilH 1662872..1663540 (+) 669 WP_065818665.1 GspH/FimT family pseudopilin Machinery gene
  QP84_RS08565 (QP84_008565) pilV 1663570..1664190 (+) 621 WP_042745216.1 type IV pilus modification protein PilV Machinery gene
  QP84_RS08570 (QP84_008570) pilJ 1664187..1665173 (+) 987 WP_025458522.1 PilW family protein Machinery gene
  QP84_RS08575 (QP84_008575) pilK 1665152..1665745 (+) 594 WP_002219444.1 pilus assembly PilX family protein Machinery gene
  QP84_RS08580 (QP84_008580) pilX 1665750..1666223 (+) 474 WP_180302171.1 PilX family type IV pilin Machinery gene

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24906.54 Da        Isoelectric Point: 10.0112

>NTDB_id=191828 QP84_RS08560 WP_065818665.1 1662872..1663540(+) (pilH) [Neisseria meningitidis strain L91543]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERVANLLRFSRGEAVRLNLPVYICPVQVKKDGTPN
NKCDSGKKGQGMLAFGDKNGNKIYDNDTADVLLRSVVLNDDINNKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYTK
DQHLTSKSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPRNDRRTVCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=191828 QP84_RS08560 WP_065818665.1 1662872..1663540(+) (pilH) [Neisseria meningitidis strain L91543]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTTGGCGATAAGAATGGCAATAAGATATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATAATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAGACTCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTACAAGCAAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACG
ATAGGCGTACCGTATGCCAATATAAATGA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

85.068

99.55

0.847

Multiple sequence alignment