Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   A6L42_RS09345 Genome accession   NZ_CP016671
Coordinates   1795040..1795546 (+) Length   168 a.a.
NCBI ID   WP_065824869.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22783     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1790040..1800546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L42_RS14880 - 1790238..1790324 (+) 87 Protein_1717 DUF2061 domain-containing protein -
  A6L42_RS09310 (A6L42_09310) - 1790402..1790731 (+) 330 WP_065821516.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  A6L42_RS14660 - 1790760..1790969 (+) 210 Protein_1719 pilin -
  A6L42_RS15080 (A6L42_09320) - 1791174..1791638 (+) 465 Protein_1720 pilin -
  A6L42_RS14670 - 1791691..1792008 (+) 318 Protein_1721 pilin -
  A6L42_RS14395 - 1792027..1792392 (+) 366 Protein_1722 pilin -
  A6L42_RS09330 (A6L42_09330) - 1792391..1792771 (+) 381 Protein_1723 pilin -
  A6L42_RS09335 (A6L42_09335) - 1792979..1793329 (+) 351 Protein_1724 pilin -
  A6L42_RS09340 (A6L42_09340) - 1793868..1794191 (+) 324 Protein_1725 pilin -
  A6L42_RS09345 (A6L42_09345) pilE 1795040..1795546 (+) 507 WP_065824869.1 pilin Machinery gene
  A6L42_RS09350 (A6L42_09350) lpxC 1796525..1797448 (+) 924 WP_002216134.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  A6L42_RS09360 (A6L42_09360) gnd 1798799..1800247 (+) 1449 WP_002236275.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17877.33 Da        Isoelectric Point: 7.8413

>NTDB_id=191214 A6L42_RS09345 WP_065824869.1 1795040..1795546(+) (pilE) [Neisseria meningitidis strain M22783]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGEWPANNSSAGVASSSTIK
GKYVQKVEVENGVITATMLSSGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVTRTKAAADDGVTAVGNDTDKIDTKHLPST
CRDASDAS

Nucleotide


Download         Length: 507 bp        

>NTDB_id=191214 A6L42_RS09345 WP_065824869.1 1795040..1795546(+) (pilE) [Neisseria meningitidis strain M22783]
ATGAACACCCTTCAAAAAGGTTTTACCCTTATCGAGCTGATGATTGTGATTGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCTGCTTATCAAGACTACACAGCCCGCGCACAAGTTTCCGAAGCCATTCTTTTGGCCGAAGGTCAAAAATCAGCCG
TCACAGAGTATTACCTGAATCACGGCGAATGGCCCGCCAACAACAGTTCTGCCGGCGTGGCATCTTCTTCAACAATCAAA
GGCAAATATGTTCAAAAAGTTGAAGTCGAAAACGGCGTCATTACCGCCACAATGCTTTCAAGCGGCGTAAACAAAGAAAT
CAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCA
CCAAAGCCGCCGCCGACGATGGCGTTACCGCCGTCGGCAACGACACCGACAAAATCGACACCAAGCACCTGCCGTCAACC
TGCCGCGACGCAAGTGATGCCAGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(36-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

82.84

100

0.833
  pilE Neisseria gonorrhoeae strain FA1090

81.548

100

0.815
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

34.375

100

0.393
  comP Acinetobacter baylyi ADP1

38.554

98.81

0.381
  pilA/pilA1 Eikenella corrodens VA1

35.429

100

0.369

Multiple sequence alignment