Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   B9N48_RS19830 Genome accession   NZ_CP021169
Coordinates   3797861..3798550 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain TLO3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3792861..3803550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS19810 yxeA 3793766..3794113 (-) 348 WP_024572303.1 YxeA family protein -
  B9N48_RS19815 yxdM 3794127..3795995 (-) 1869 WP_086344512.1 ABC transporter permease YxdM -
  B9N48_RS19820 yxdL 3795970..3796743 (-) 774 WP_024572301.1 ABC transporter ATP-binding protein YxdL -
  B9N48_RS19825 yxdK 3796887..3797864 (-) 978 WP_086344513.1 two-component system sensor histidine kinase YxdK -
  B9N48_RS19830 braR 3797861..3798550 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  B9N48_RS19835 iolJ 3798658..3799530 (-) 873 WP_015250854.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  B9N48_RS19840 iolI 3799551..3800387 (-) 837 WP_015715014.1 2-keto-myo-inositol isomerase -
  B9N48_RS19845 iolH 3800473..3801342 (-) 870 WP_086344514.1 sugar phosphate isomerase/epimerase -
  B9N48_RS19850 iolG 3801362..3802396 (-) 1035 WP_014481414.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=190846 B9N48_RS19830 WP_003243527.1 3797861..3798550(-) (braR) [Bacillus subtilis strain TLO3]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=190846 B9N48_RS19830 WP_003243527.1 3797861..3798550(-) (braR) [Bacillus subtilis strain TLO3]
TTGAATAAAATTATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAACGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment