Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   A6L21_RS03960 Genome accession   NZ_CP016644
Coordinates   745737..746330 (+) Length   197 a.a.
NCBI ID   WP_002248275.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M07162     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 740737..751330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L21_RS03935 (A6L21_03935) - 741203..741790 (-) 588 WP_002220670.1 superoxide dismutase -
  A6L21_RS03940 (A6L21_03940) dnaB 741953..743359 (+) 1407 WP_002248271.1 replicative DNA helicase -
  A6L21_RS03945 (A6L21_03945) pilH 743514..744191 (+) 678 WP_041422476.1 GspH/FimT family pseudopilin Machinery gene
  A6L21_RS03950 (A6L21_03950) pilV 744215..744826 (+) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  A6L21_RS03955 (A6L21_03955) pilJ 744823..745758 (+) 936 WP_041422477.1 PilW family protein Machinery gene
  A6L21_RS03960 (A6L21_03960) pilK 745737..746330 (+) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6L21_RS03965 (A6L21_03965) pilX 746335..746808 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6L21_RS03970 (A6L21_03970) - 748867..749295 (-) 429 Protein_750 AzlC family ABC transporter permease -
  A6L21_RS03975 (A6L21_03975) dut 749438..749890 (+) 453 WP_002220679.1 dUTP diphosphatase -
  A6L21_RS03980 (A6L21_03980) dapC 749966..751153 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21725.67 Da        Isoelectric Point: 6.3911

>NTDB_id=189931 A6L21_RS03960 WP_002248275.1 745737..746330(+) (pilK) [Neisseria meningitidis strain M07162]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRFCPANSTDLCIDKKGMEYKKGTRSVSKPPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=189931 A6L21_RS03960 WP_002248275.1 745737..746330(+) (pilK) [Neisseria meningitidis strain M07162]
ATGCGCAAACAGAACGCTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCGCTGTTTATCGTGCTGATGGT
AATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATTCTACCG
ACCTGTGCATTGACAAGAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCACCGCGCTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

85.644

100

0.878

Multiple sequence alignment