Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   A6L21_RS03945 Genome accession   NZ_CP016644
Coordinates   743514..744191 (+) Length   225 a.a.
NCBI ID   WP_041422476.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M07162     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 738514..749191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L21_RS14870 - 739232..739339 (+) 108 Protein_740 IS5/IS1182 family transposase -
  A6L21_RS03925 (A6L21_03925) - 739384..739716 (+) 333 WP_002226445.1 hypothetical protein -
  A6L21_RS03930 (A6L21_03930) - 740048..740557 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  A6L21_RS03935 (A6L21_03935) - 741203..741790 (-) 588 WP_002220670.1 superoxide dismutase -
  A6L21_RS03940 (A6L21_03940) dnaB 741953..743359 (+) 1407 WP_002248271.1 replicative DNA helicase -
  A6L21_RS03945 (A6L21_03945) pilH 743514..744191 (+) 678 WP_041422476.1 GspH/FimT family pseudopilin Machinery gene
  A6L21_RS03950 (A6L21_03950) pilV 744215..744826 (+) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  A6L21_RS03955 (A6L21_03955) pilJ 744823..745758 (+) 936 WP_041422477.1 PilW family protein Machinery gene
  A6L21_RS03960 (A6L21_03960) pilK 745737..746330 (+) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6L21_RS03965 (A6L21_03965) pilX 746335..746808 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25327.97 Da        Isoelectric Point: 9.8985

>NTDB_id=189928 A6L21_RS03945 WP_041422476.1 743514..744191(+) (pilH) [Neisseria meningitidis strain M07162]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVQKDGTVN
NKCDSGKKGQGMLAFGDKNGNKGYDNDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTTDRVVWTFNQNGTFGYTK
DQHLTKQSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRGDRRTRRTMCQYK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=189928 A6L21_RS03945 WP_041422476.1 743514..744191(+) (pilH) [Neisseria meningitidis strain M07162]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTCAAAAAGACGGTACGGTCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGGATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTTGGTCAGACTCAGCCGACCACCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTACAAAACAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTG
ATCGGCGTACTCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

81.25

99.556

0.809

Multiple sequence alignment