Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   A6L21_RS03955 Genome accession   NZ_CP016644
Coordinates   744823..745758 (+) Length   311 a.a.
NCBI ID   WP_041422477.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M07162     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 739823..750758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L21_RS03930 (A6L21_03930) - 740048..740557 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  A6L21_RS03935 (A6L21_03935) - 741203..741790 (-) 588 WP_002220670.1 superoxide dismutase -
  A6L21_RS03940 (A6L21_03940) dnaB 741953..743359 (+) 1407 WP_002248271.1 replicative DNA helicase -
  A6L21_RS03945 (A6L21_03945) pilH 743514..744191 (+) 678 WP_041422476.1 GspH/FimT family pseudopilin Machinery gene
  A6L21_RS03950 (A6L21_03950) pilV 744215..744826 (+) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  A6L21_RS03955 (A6L21_03955) pilJ 744823..745758 (+) 936 WP_041422477.1 PilW family protein Machinery gene
  A6L21_RS03960 (A6L21_03960) pilK 745737..746330 (+) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6L21_RS03965 (A6L21_03965) pilX 746335..746808 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6L21_RS03970 (A6L21_03970) - 748867..749295 (-) 429 Protein_750 AzlC family ABC transporter permease -
  A6L21_RS03975 (A6L21_03975) dut 749438..749890 (+) 453 WP_002220679.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 34258.96 Da        Isoelectric Point: 9.2153

>NTDB_id=189930 A6L21_RS03955 WP_041422477.1 744823..745758(+) (pilJ) [Neisseria meningitidis strain M07162]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVAQKNRLFSLKRNSTNKLIPITESLNIGYPGFTQRLNALIFQYGIDDVNASADTTVVSSCAKIAK
PGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLNDGQWGNPQLLVKKINKMDIRYIYVSG
CPEDDDAGKEETFRYTDKFNSAQDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNICANRTL

Nucleotide


Download         Length: 936 bp        

>NTDB_id=189930 A6L21_RS03955 WP_041422477.1 744823..745758(+) (pilJ) [Neisseria meningitidis strain M07162]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAG
GAACAGTACAAATAAACTTATCCCCATAACGGAATCTTTAAATATCGGATATCCGGGTTTTACCCAGCGCCTTAACGCAT
TGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCCAAAATAGCAAAA
CCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATAT
CACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGA
ATGATGGGCAGTGGGGTAATCCTCAGTTGTTGGTTAAAAAGATTAATAAAATGGATATACGGTATATTTATGTTTCCGGC
TGCCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAGATATACGGATAAATTCAACAGCGCCCAAGATGCTGTTAC
GCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATGCTT
ACCGTATCGATGCGACAATACGCGGGGGAAATATATGCGCAAACAGAACGCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

80.063

100

0.814

Multiple sequence alignment