Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   A6L21_RS03950 Genome accession   NZ_CP016644
Coordinates   744215..744826 (+) Length   203 a.a.
NCBI ID   WP_002248273.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M07162     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 739215..749826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L21_RS14870 - 739232..739339 (+) 108 Protein_740 IS5/IS1182 family transposase -
  A6L21_RS03925 (A6L21_03925) - 739384..739716 (+) 333 WP_002226445.1 hypothetical protein -
  A6L21_RS03930 (A6L21_03930) - 740048..740557 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  A6L21_RS03935 (A6L21_03935) - 741203..741790 (-) 588 WP_002220670.1 superoxide dismutase -
  A6L21_RS03940 (A6L21_03940) dnaB 741953..743359 (+) 1407 WP_002248271.1 replicative DNA helicase -
  A6L21_RS03945 (A6L21_03945) pilH 743514..744191 (+) 678 WP_041422476.1 GspH/FimT family pseudopilin Machinery gene
  A6L21_RS03950 (A6L21_03950) pilV 744215..744826 (+) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  A6L21_RS03955 (A6L21_03955) pilJ 744823..745758 (+) 936 WP_041422477.1 PilW family protein Machinery gene
  A6L21_RS03960 (A6L21_03960) pilK 745737..746330 (+) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6L21_RS03965 (A6L21_03965) pilX 746335..746808 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6L21_RS03970 (A6L21_03970) - 748867..749295 (-) 429 Protein_750 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22100.14 Da        Isoelectric Point: 4.8335

>NTDB_id=189929 A6L21_RS03950 WP_002248273.1 744215..744826(+) (pilV) [Neisseria meningitidis strain M07162]
MKNNDCFRLKDSQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYMRNHTLSAVDGDFAIDAIKTKAQLAEEQLKRFSYELKNALPDAAAIRYAVCKDSLGAAPTLSAGSTFSPNCDNKAN
GDTLIKVLWVNDSAGDSDIARTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=189929 A6L21_RS03950 WP_002248273.1 744215..744826(+) (pilV) [Neisseria meningitidis strain M07162]
ATGAAGAATAATGATTGCTTCCGCCTGAAAGATTCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTTGCTATGCTCGT
TCTGACCATCGGTATTTTGGCGTTACTGTCTGTGCAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACATGAGAAACCATACACTATCAGCTGTGGATGGCGATTTTGCGATTGATGCCATAAAAACTAAGGCGCA
GTTGGCAGAGGAACAATTGAAGAGATTTAGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGCAGCCATCCGTTACGCCG
TCTGCAAGGATTCGTTGGGTGCTGCGCCGACATTGTCCGCCGGCAGTACTTTTTCTCCAAATTGCGATAATAAGGCAAAC
GGAGATACTTTAATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATCGCCCGTACGAATCTTGAGGTGAG
CGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGGGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

91.304

100

0.931
  pilI Neisseria gonorrhoeae MS11

82.266

100

0.823
  pilV Neisseria gonorrhoeae MS11

82.266

100

0.823

Multiple sequence alignment