Detailed information NTG0189929

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: B9W17_RS07810
• Genome accession: NZ_CP020933
• Coordinates: 1596595..1597587 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain HB-Coli0
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1591595..1602587

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B9W17_RS07780 (B9W17_08220)	ispD	1591656..1592366 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
B9W17_RS07785 (B9W17_08225)	ispF	1592366..1592845 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
B9W17_RS07790 (B9W17_08230)	truD	1592842..1593891 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
B9W17_RS07795 (B9W17_08235)	surE	1593872..1594633 (+)	762	WP_057697505.1	5'/3'-nucleotidase SurE	-
B9W17_RS07800 (B9W17_08240)	pcm	1594627..1595253 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
B9W17_RS07805 (B9W17_08245)	nlpD	1595438..1596532 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
B9W17_RS07810 (B9W17_08250)	rpoS	1596595..1597587 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
B9W17_RS07815 (B9W17_08255)	-	1597708..1598115 (-)	408	WP_001208072.1	MarR family transcriptional regulator	-
B9W17_RS07820 (B9W17_08260)	-	1598262..1598855 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
B9W17_RS07825 (B9W17_08265)	-	1598855..1600282 (+)	1428	WP_021578698.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
B9W17_RS07830 (B9W17_08270)	-	1600293..1600529 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
B9W17_RS07835 (B9W17_08275)	ygbN	1600568..1601932 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=189929 B9W17_RS07810 WP_000081550.1 1596595..1597587(+) (rpoS) [Escherichia coli strain HB-Coli0]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=189929 B9W17_RS07810 WP_000081550.1 1596595..1597587(+) (rpoS) [Escherichia coli strain HB-Coli0]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715