Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   A6L21_RS03965 Genome accession   NZ_CP016644
Coordinates   746335..746808 (+) Length   157 a.a.
NCBI ID   WP_002248276.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M07162     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 741335..751808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L21_RS03940 (A6L21_03940) dnaB 741953..743359 (+) 1407 WP_002248271.1 replicative DNA helicase -
  A6L21_RS03945 (A6L21_03945) pilH 743514..744191 (+) 678 WP_041422476.1 GspH/FimT family pseudopilin Machinery gene
  A6L21_RS03950 (A6L21_03950) pilV 744215..744826 (+) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  A6L21_RS03955 (A6L21_03955) pilJ 744823..745758 (+) 936 WP_041422477.1 PilW family protein Machinery gene
  A6L21_RS03960 (A6L21_03960) pilK 745737..746330 (+) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6L21_RS03965 (A6L21_03965) pilX 746335..746808 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6L21_RS03970 (A6L21_03970) - 748867..749295 (-) 429 Protein_750 AzlC family ABC transporter permease -
  A6L21_RS03975 (A6L21_03975) dut 749438..749890 (+) 453 WP_002220679.1 dUTP diphosphatase -
  A6L21_RS03980 (A6L21_03980) dapC 749966..751153 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  A6L21_RS14875 - 751241..751366 (+) 126 Protein_753 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17528.29 Da        Isoelectric Point: 9.4344

>NTDB_id=189932 A6L21_RS03965 WP_002248276.1 746335..746808(+) (pilX) [Neisseria meningitidis strain M07162]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAEKYNVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASARAHLETLSSDVGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=189932 A6L21_RS03965 WP_002248276.1 746335..746808(+) (pilX) [Neisseria meningitidis strain M07162]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAATGTTTCGGTGCATTTTGTCAATAAGGAAAAACCAAGGGCATACAGCTTGGTCGG
CGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCGAGCCCATTTGGAGACCTTGTCCTCAGATGTCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

99.363

100

0.994
  pilL Neisseria gonorrhoeae MS11

86.624

100

0.866

Multiple sequence alignment