Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   B9W17_RS08100 Genome accession   NZ_CP020933
Coordinates   1652708..1653223 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain HB-Coli0     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1647708..1658223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9W17_RS08055 (B9W17_08500) csrA 1648160..1648345 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  B9W17_RS08085 (B9W17_08530) yqaB 1649938..1650504 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  B9W17_RS08090 (B9W17_08535) yqaA 1650501..1650929 (+) 429 WP_001287457.1 YqaA family protein -
  B9W17_RS08095 (B9W17_08540) gshA 1651002..1652558 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  B9W17_RS08100 (B9W17_08545) luxS 1652708..1653223 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  B9W17_RS08105 (B9W17_08550) emrB 1653287..1654825 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  B9W17_RS08110 (B9W17_08555) emrA 1654842..1656014 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  B9W17_RS08115 (B9W17_08560) emrR 1656141..1656671 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  B9W17_RS08120 (B9W17_08565) ygaH 1656762..1657097 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  B9W17_RS08125 (B9W17_08570) ygaZ 1657087..1657824 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=189932 B9W17_RS08100 WP_001130207.1 1652708..1653223(+) (luxS) [Escherichia coli strain HB-Coli0]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=189932 B9W17_RS08100 WP_001130207.1 1652708..1653223(+) (luxS) [Escherichia coli strain HB-Coli0]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment