Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B9W17_RS02675 Genome accession   NZ_CP020933
Coordinates   572157..572825 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain HB-Coli0     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 567157..577825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9W17_RS02645 (B9W17_02835) yicC 567176..568039 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  B9W17_RS02650 (B9W17_02845) rph 568166..568882 (+) 717 WP_001247093.1 ribonuclease PH -
  B9W17_RS02655 (B9W17_02850) pyrE 568948..569589 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  B9W17_RS02660 (B9W17_02855) slmA 569626..570222 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  B9W17_RS02665 (B9W17_02860) dut 570329..570787 (-) 459 WP_000976070.1 dUTP diphosphatase -
  B9W17_RS02670 (B9W17_02865) coaBC 570765..571985 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  B9W17_RS02675 (B9W17_02870) radC 572157..572825 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  B9W17_RS02680 (B9W17_02875) rpmB 573042..573278 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  B9W17_RS02685 (B9W17_02880) rpmG 573299..573466 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  B9W17_RS02690 (B9W17_02885) mutM 573564..574373 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  B9W17_RS02695 (B9W17_02890) coaD 574412..574891 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  B9W17_RS02700 (B9W17_02895) waaA 574899..576176 (-) 1278 WP_000891570.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  B9W17_RS02705 (B9W17_02900) rfaQ 576589..577647 (+) 1059 WP_001584016.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=189910 B9W17_RS02675 WP_001297375.1 572157..572825(+) (radC) [Escherichia coli strain HB-Coli0]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=189910 B9W17_RS02675 WP_001297375.1 572157..572825(+) (radC) [Escherichia coli strain HB-Coli0]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment