Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   N894_RS09020 Genome accession   NZ_CP016635
Coordinates   1840209..1841717 (-) Length   502 a.a.
NCBI ID   WP_071304761.1    Uniprot ID   -
Organism   Francisella tularensis subsp. novicida PA10-7858     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1835209..1846717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N894_RS09000 (N894_1854) nusA 1836956..1838425 (-) 1470 WP_071304759.1 transcription termination factor NusA -
  N894_RS09005 (N894_1855) rimP 1838443..1838895 (-) 453 WP_003024580.1 ribosome maturation factor RimP -
  N894_RS09015 (N894_1856) hemE 1839121..1840155 (-) 1035 WP_071304760.1 uroporphyrinogen decarboxylase -
  N894_RS09020 (N894_1857) comM 1840209..1841717 (-) 1509 WP_071304761.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  N894_RS09025 (N894_1858) - 1841719..1841913 (-) 195 WP_032729669.1 accessory factor UbiK family protein -
  N894_RS09030 (N894_1859) - 1841989..1843440 (-) 1452 WP_071304762.1 NADH-quinone oxidoreductase subunit N -
  N894_RS09035 (N894_1860) - 1843456..1845045 (-) 1590 WP_071304763.1 complex I subunit 4 family protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 55098.62 Da        Isoelectric Point: 8.5300

>NTDB_id=189897 N894_RS09020 WP_071304761.1 1840209..1841717(-) (comM) [Francisella tularensis subsp. novicida PA10-7858]
MSLAVLKSRAQLGIEAPLVCIEVHLSNGLPGLSIVGLPEAAVKESKDRVRSAIINSGFNFPNKRITINLAPADLPKSSGR
FDLPIALGILYASGQVNIVENIDEYEFAGELSLSGELRKISSAIPMAIKCVEENKKLIVPTQNNKEIGLVESVKAYGFDS
LNEVVEFLSGTKKEPIKPSVEIDFAKLYQDLEDVKGQYQAKRALEIAAAGGHNILLVGPPGTGKTMLASRLNSILPPLDK
KEALSSAMIASIKGESEIAESFYKRPFRHPHHTSSGVSLVGGGSNPMPGEISLAHNGVLFLDELPEFDRKVLEVLREPLE
TGSVNISRARCQVEYPANFQLIAAMNPCPCGYLGSQFKECTDSIQAIRRYQSKLSGPLLDRIDLHVEVLELAKEDLTNQQ
LRGEKSSIIRERVKSARDRQVSRQGKINAMLSSKELDKVCNLNNETKKMLTMAIEKLGLSARGYYKILKVARTIADLNST
ENIDKTAIQEAISYRKMDKFIK

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=189897 N894_RS09020 WP_071304761.1 1840209..1841717(-) (comM) [Francisella tularensis subsp. novicida PA10-7858]
ATGTCTTTAGCAGTTCTAAAGAGTCGCGCACAACTTGGTATTGAGGCACCTCTTGTTTGTATAGAAGTACATTTATCAAA
TGGTTTGCCAGGTTTATCAATAGTGGGGTTACCAGAGGCAGCTGTTAAAGAAAGTAAAGATCGTGTTAGAAGTGCAATTA
TCAACTCAGGCTTTAATTTCCCTAATAAGCGTATCACAATCAATCTTGCTCCAGCTGACTTACCTAAGAGTAGTGGTAGA
TTTGATTTGCCAATTGCATTAGGTATTTTGTATGCATCTGGGCAAGTAAATATTGTCGAAAATATTGATGAGTATGAATT
TGCTGGTGAATTATCTTTAAGTGGTGAACTAAGAAAAATATCCAGTGCTATACCGATGGCTATTAAATGTGTTGAGGAAA
ATAAAAAACTTATTGTACCGACACAAAATAATAAAGAGATTGGTTTGGTTGAGTCAGTTAAAGCTTATGGCTTTGATAGT
TTAAATGAGGTCGTGGAGTTTTTATCTGGGACTAAAAAAGAGCCAATAAAACCCAGTGTTGAGATTGATTTTGCTAAGCT
ATATCAAGATTTAGAGGATGTCAAAGGACAATATCAAGCAAAAAGAGCATTAGAAATCGCCGCGGCAGGTGGGCATAATA
TTCTTTTAGTAGGTCCTCCGGGTACCGGTAAGACAATGTTGGCAAGTAGGCTAAATTCGATCTTACCACCATTAGATAAA
AAAGAAGCGCTTTCATCGGCAATGATCGCATCAATTAAAGGAGAGTCAGAAATCGCTGAAAGCTTTTATAAAAGACCATT
TCGTCATCCGCATCATACCTCATCAGGAGTGTCTTTGGTTGGTGGTGGCAGTAATCCAATGCCAGGTGAGATTTCCTTAG
CACATAATGGTGTGCTTTTTCTTGATGAGTTACCAGAGTTTGATCGTAAAGTTTTAGAAGTATTGCGTGAGCCTTTGGAG
ACAGGAAGTGTGAATATCTCTAGAGCTAGATGCCAAGTCGAATATCCAGCTAATTTTCAGTTAATAGCAGCAATGAATCC
ATGTCCATGTGGATATTTAGGCTCACAATTTAAAGAGTGTACTGATTCAATCCAAGCGATTAGAAGATATCAAAGTAAAT
TATCTGGCCCACTTCTAGATAGGATAGATCTTCATGTTGAAGTTCTTGAGCTTGCAAAAGAGGATCTAACAAATCAGCAG
TTAAGAGGCGAGAAAAGTAGCATAATTAGAGAGCGAGTTAAAAGTGCTCGAGATAGACAAGTCTCTCGACAGGGTAAGAT
TAACGCAATGCTATCTAGTAAAGAGCTTGATAAGGTTTGTAATCTTAATAATGAAACAAAAAAAATGCTTACAATGGCTA
TAGAAAAGCTTGGACTATCAGCAAGAGGGTATTATAAAATACTCAAAGTTGCTAGAACTATAGCAGACCTTAATAGTACA
GAAAATATTGATAAAACAGCTATTCAAGAAGCTATTAGTTATAGAAAAATGGATAAGTTTATCAAGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

52.381

100

0.526
  comM Vibrio cholerae strain A1552

52.277

100

0.526
  comM Glaesserella parasuis strain SC1401

51.874

100

0.524
  comM Haemophilus influenzae Rd KW20

50.984

100

0.516
  comM Legionella pneumophila str. Paris

51.406

99.203

0.51
  comM Legionella pneumophila strain ERS1305867

51.406

99.203

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

49.398

99.203

0.49

Multiple sequence alignment