Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | A6B39_RS03370 | Genome accession | NZ_CP016606 |
| Coordinates | 673367..674563 (+) | Length | 398 a.a. |
| NCBI ID | WP_176669725.1 | Uniprot ID | - |
| Organism | Mannheimia granulomatis strain BJ1680.3 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 668367..679563
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6B39_RS03345 (A6B39_03300) | - | 669003..669491 (+) | 489 | WP_176669721.1 | dihydrofolate reductase | - |
| A6B39_RS03350 (A6B39_03305) | - | 669621..669854 (+) | 234 | WP_027074413.1 | YgjV family protein | - |
| A6B39_RS03355 (A6B39_03310) | radA | 669920..671299 (-) | 1380 | WP_176669722.1 | DNA repair protein RadA | - |
| A6B39_RS03360 (A6B39_03315) | pilA | 671484..671945 (+) | 462 | WP_176669723.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| A6B39_RS03365 (A6B39_03320) | pilB | 671983..673374 (+) | 1392 | WP_176669724.1 | GspE/PulE family protein | Machinery gene |
| A6B39_RS03370 (A6B39_03325) | pilC | 673367..674563 (+) | 1197 | WP_176669725.1 | type II secretion system F family protein | Machinery gene |
| A6B39_RS03375 (A6B39_03330) | - | 674567..675202 (+) | 636 | WP_176669726.1 | prepilin peptidase | - |
| A6B39_RS03380 (A6B39_03335) | - | 675296..675604 (+) | 309 | WP_176669727.1 | helix-turn-helix domain-containing protein | - |
| A6B39_RS03385 (A6B39_03340) | coaE | 675614..676252 (+) | 639 | WP_176669728.1 | dephospho-CoA kinase | - |
| A6B39_RS03390 (A6B39_03345) | yacG | 676234..676419 (+) | 186 | WP_176669729.1 | DNA gyrase inhibitor YacG | - |
| A6B39_RS03395 (A6B39_03350) | holA | 676420..677445 (-) | 1026 | WP_176669730.1 | DNA polymerase III subunit delta | - |
| A6B39_RS03400 (A6B39_03355) | lptE | 677489..677983 (-) | 495 | WP_027074423.1 | LPS assembly lipoprotein LptE | - |
Sequence
Protein
Download Length: 398 a.a. Molecular weight: 45582.41 Da Isoelectric Point: 9.8697
>NTDB_id=189624 A6B39_RS03370 WP_176669725.1 673367..674563(+) (pilC) [Mannheimia granulomatis strain BJ1680.3]
MAKVYEYQWKAIDRFQQKRKGKQLASSHAELEQKLISKGYHHIRISRNFVLPHAPKKEDINQVLSQLALLVNSAIPLKQA
LAMIVQNCYNILLYQWLNKLIMQIESGYSFSQSLQKLDKFISNQEIQLIKMGEQSGKLGTILTNLTESRIKSEKLAKKMK
KILFYPVIVLVISLALSIGLLVFIVPQFTELYGSKAKSLPFITDVLFGLSRFLLEQKISLLVLLLLAVIFFLFFANKLKF
LRLLKMRLLSNIPVFSKIIAYSRIVFFSQNLSLMLNAHIPLEMALNSFLSEKSDDPILQYEVQYMLDLLKQGYRFSEGIN
PTVFGSDLVQMMDIGEKSGNLAKMGEHISEIYQHKLDYQIDILSQLLEPMLMLIMGVIVGTIIIGLYLPIFDMGTLME
MAKVYEYQWKAIDRFQQKRKGKQLASSHAELEQKLISKGYHHIRISRNFVLPHAPKKEDINQVLSQLALLVNSAIPLKQA
LAMIVQNCYNILLYQWLNKLIMQIESGYSFSQSLQKLDKFISNQEIQLIKMGEQSGKLGTILTNLTESRIKSEKLAKKMK
KILFYPVIVLVISLALSIGLLVFIVPQFTELYGSKAKSLPFITDVLFGLSRFLLEQKISLLVLLLLAVIFFLFFANKLKF
LRLLKMRLLSNIPVFSKIIAYSRIVFFSQNLSLMLNAHIPLEMALNSFLSEKSDDPILQYEVQYMLDLLKQGYRFSEGIN
PTVFGSDLVQMMDIGEKSGNLAKMGEHISEIYQHKLDYQIDILSQLLEPMLMLIMGVIVGTIIIGLYLPIFDMGTLME
Nucleotide
Download Length: 1197 bp
>NTDB_id=189624 A6B39_RS03370 WP_176669725.1 673367..674563(+) (pilC) [Mannheimia granulomatis strain BJ1680.3]
ATGGCTAAAGTGTATGAATATCAATGGAAAGCGATAGATCGTTTTCAGCAAAAAAGAAAAGGCAAGCAATTAGCCTCAAG
CCACGCAGAACTTGAGCAAAAACTGATTTCCAAAGGCTACCATCATATTCGTATCAGCCGTAATTTTGTTCTGCCACACG
CACCTAAAAAGGAAGATATTAATCAGGTTTTATCGCAACTTGCTTTATTGGTGAATTCCGCTATTCCACTTAAACAGGCT
TTGGCGATGATAGTACAAAATTGCTATAACATCCTACTTTATCAGTGGTTAAATAAGTTGATTATGCAGATTGAAAGTGG
CTATTCGTTTTCGCAATCGCTCCAGAAATTAGACAAGTTTATCAGCAACCAAGAAATTCAGCTCATCAAAATGGGGGAGC
AGAGTGGCAAGCTAGGTACGATTTTGACCAATCTAACGGAAAGCCGAATTAAATCGGAAAAGCTCGCTAAAAAAATGAAG
AAAATTCTCTTTTACCCTGTGATTGTGTTAGTGATTTCACTCGCACTTTCTATCGGTTTATTGGTGTTTATCGTTCCTCA
ATTTACCGAGCTTTACGGCTCAAAAGCAAAAAGCTTACCTTTTATTACAGATGTGCTATTTGGGCTTTCCCGTTTTTTGC
TGGAACAGAAAATAAGTTTACTGGTTCTGCTGCTACTAGCGGTTATTTTTTTCCTGTTTTTTGCAAATAAGCTTAAATTC
TTGCGGCTGCTAAAAATGCGATTACTGTCTAATATACCTGTATTTAGCAAGATTATTGCGTATTCCCGCATTGTATTTTT
CAGCCAAAATCTCTCCCTAATGCTCAATGCTCATATTCCGTTGGAAATGGCATTAAATTCATTTTTATCTGAAAAGAGTG
ATGATCCGATTTTACAATATGAAGTTCAATATATGCTGGATTTATTAAAGCAAGGTTATCGATTTTCAGAAGGTATAAAC
CCAACAGTGTTTGGCTCGGATTTGGTTCAAATGATGGATATTGGTGAGAAAAGCGGTAATTTAGCAAAAATGGGCGAGCA
TATTAGCGAGATTTATCAGCATAAATTAGATTACCAAATAGACATTCTATCCCAATTATTAGAGCCTATGCTGATGTTAA
TTATGGGGGTGATTGTCGGCACTATTATTATCGGGCTGTATCTACCAATTTTTGATATGGGTACTCTAATGGAGTAG
ATGGCTAAAGTGTATGAATATCAATGGAAAGCGATAGATCGTTTTCAGCAAAAAAGAAAAGGCAAGCAATTAGCCTCAAG
CCACGCAGAACTTGAGCAAAAACTGATTTCCAAAGGCTACCATCATATTCGTATCAGCCGTAATTTTGTTCTGCCACACG
CACCTAAAAAGGAAGATATTAATCAGGTTTTATCGCAACTTGCTTTATTGGTGAATTCCGCTATTCCACTTAAACAGGCT
TTGGCGATGATAGTACAAAATTGCTATAACATCCTACTTTATCAGTGGTTAAATAAGTTGATTATGCAGATTGAAAGTGG
CTATTCGTTTTCGCAATCGCTCCAGAAATTAGACAAGTTTATCAGCAACCAAGAAATTCAGCTCATCAAAATGGGGGAGC
AGAGTGGCAAGCTAGGTACGATTTTGACCAATCTAACGGAAAGCCGAATTAAATCGGAAAAGCTCGCTAAAAAAATGAAG
AAAATTCTCTTTTACCCTGTGATTGTGTTAGTGATTTCACTCGCACTTTCTATCGGTTTATTGGTGTTTATCGTTCCTCA
ATTTACCGAGCTTTACGGCTCAAAAGCAAAAAGCTTACCTTTTATTACAGATGTGCTATTTGGGCTTTCCCGTTTTTTGC
TGGAACAGAAAATAAGTTTACTGGTTCTGCTGCTACTAGCGGTTATTTTTTTCCTGTTTTTTGCAAATAAGCTTAAATTC
TTGCGGCTGCTAAAAATGCGATTACTGTCTAATATACCTGTATTTAGCAAGATTATTGCGTATTCCCGCATTGTATTTTT
CAGCCAAAATCTCTCCCTAATGCTCAATGCTCATATTCCGTTGGAAATGGCATTAAATTCATTTTTATCTGAAAAGAGTG
ATGATCCGATTTTACAATATGAAGTTCAATATATGCTGGATTTATTAAAGCAAGGTTATCGATTTTCAGAAGGTATAAAC
CCAACAGTGTTTGGCTCGGATTTGGTTCAAATGATGGATATTGGTGAGAAAAGCGGTAATTTAGCAAAAATGGGCGAGCA
TATTAGCGAGATTTATCAGCATAAATTAGATTACCAAATAGACATTCTATCCCAATTATTAGAGCCTATGCTGATGTTAA
TTATGGGGGTGATTGTCGGCACTATTATTATCGGGCTGTATCTACCAATTTTTGATATGGGTACTCTAATGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Glaesserella parasuis strain SC1401 |
55.276 |
100 |
0.553 |
| pilC | Haemophilus influenzae Rd KW20 |
41.728 |
100 |
0.425 |
| pilC | Haemophilus influenzae 86-028NP |
40.741 |
100 |
0.415 |