Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A6A11_RS00385 Genome accession   NZ_CP016605
Coordinates   78982..80514 (-) Length   510 a.a.
NCBI ID   WP_132023735.1    Uniprot ID   A0A4R2MXQ3
Organism   Bisgaardia hudsonensis strain M327/99/2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 73982..85514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6A11_RS00355 (A6A11_00350) rsmE 74227..74961 (+) 735 WP_132023723.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  A6A11_RS00360 (A6A11_00355) - 74980..75537 (+) 558 WP_132023725.1 YqgE/AlgH family protein -
  A6A11_RS00365 (A6A11_00360) ruvX 75537..75956 (+) 420 WP_132023727.1 Holliday junction resolvase RuvX -
  A6A11_RS00370 (A6A11_00365) - 76030..76713 (-) 684 WP_132023729.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  A6A11_RS00375 (A6A11_00370) envC 76902..78128 (+) 1227 WP_132023731.1 murein hydrolase activator EnvC -
  A6A11_RS00380 (A6A11_00375) - 78146..78976 (+) 831 WP_418883944.1 divergent polysaccharide deacetylase family protein -
  A6A11_RS00385 (A6A11_00380) comM 78982..80514 (-) 1533 WP_132023735.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A6A11_RS00390 (A6A11_00385) - 80784..81338 (+) 555 WP_132023737.1 carboxymuconolactone decarboxylase family protein -
  A6A11_RS00395 (A6A11_00390) yihA 81417..82031 (-) 615 WP_132023739.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  A6A11_RS00400 (A6A11_00395) - 82149..83024 (+) 876 WP_132023740.1 VirK/YbjX family protein -
  A6A11_RS00405 (A6A11_00400) gpt 83072..83536 (-) 465 WP_132023742.1 xanthine phosphoribosyltransferase -
  A6A11_RS00410 (A6A11_00405) - 83667..85127 (+) 1461 WP_132023744.1 aminoacyl-histidine dipeptidase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 56202.93 Da        Isoelectric Point: 10.1054

>NTDB_id=189597 A6A11_RS00385 WP_132023735.1 78982..80514(-) (comM) [Bisgaardia hudsonensis strain M327/99/2]
MSLAVVYSRASMGVQAPLVTIEVHISNGKPAFTLVGLPEKTVTEAQGRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASGQLESKYLQHFELLGELALTGGLRGVQGIIPAILAAKKQKRRLIIAKQNANEAALVVDQETYFAETL
LDVVNFLNERHQLPLASAIVSNNNHQQLNPIQRDLTDIIGQQHAKRALTIAATGQHNLLFLGPPGTGKTMLASRLTDLLP
EMTTQEAIETASVTSLIHNELNFHNWKKRPFRSPHHSASLPALVGGGTIPKPGEISLAHNGILFLDELPEFDRKVLDALR
QPLESGEIIISRANAKILFPAKFQLVAAMNPSPTGHYSGIHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPKGTLQN
TNERGETSEEVRNKVLKIREIQLTRAGKVNAYLTSKEIEKYCRLSKDNAFFLENALTKLGLSVRAYHRILKVARTIADLA
EEKDIAQPHIAEALGYRAMDRLLQKLSNNL

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=189597 A6A11_RS00385 WP_132023735.1 78982..80514(-) (comM) [Bisgaardia hudsonensis strain M327/99/2]
ATGTCGTTAGCTGTTGTTTATAGTCGTGCTTCTATGGGAGTGCAAGCACCATTAGTTACTATTGAAGTCCATATTAGCAA
TGGTAAGCCAGCATTTACCCTTGTAGGTTTACCAGAAAAAACAGTTACGGAAGCACAAGGGCGTGTGCGAAGTGCATTAT
TAAATGCACAGTTTAAATATCCTGCAAAACGAATTACCGTTAATCTTGCACCAGCTGATTTACCAAAAGAAGGGGGGCGT
TTTGATTTGCCTATCGCCATTGGCATATTGGCCGCTTCAGGACAATTAGAGAGTAAATATTTACAACATTTTGAGTTATT
AGGTGAATTAGCTTTAACAGGGGGATTACGAGGCGTTCAAGGAATTATTCCTGCTATTTTAGCTGCTAAAAAACAAAAAC
GCCGTTTAATTATTGCGAAACAAAATGCGAATGAAGCAGCCTTAGTCGTTGATCAAGAAACCTATTTTGCTGAAACCTTG
TTAGACGTGGTTAATTTTCTTAATGAACGACATCAATTGCCCTTAGCCAGCGCAATTGTATCAAATAATAACCATCAGCA
ATTAAACCCAATACAACGAGATCTTACTGATATTATAGGTCAACAACACGCTAAGCGAGCATTAACCATTGCAGCAACAG
GACAACATAATCTATTATTTCTAGGTCCACCTGGAACAGGAAAAACAATGTTAGCGAGTCGTTTAACAGATTTACTCCCT
GAAATGACCACACAAGAAGCCATAGAAACCGCTTCCGTTACTAGTCTTATTCATAATGAATTAAATTTTCATAATTGGAA
AAAGCGTCCTTTTCGTTCACCACATCATAGTGCCTCTTTACCTGCTTTAGTGGGCGGTGGTACGATCCCCAAACCGGGGG
AAATATCCTTAGCACATAATGGTATTTTATTTTTAGATGAACTGCCAGAGTTTGATCGCAAGGTACTAGATGCTTTAAGA
CAGCCTTTAGAAAGTGGCGAAATCATTATTTCTCGAGCCAATGCTAAAATCTTATTTCCGGCTAAATTTCAATTAGTTGC
AGCGATGAACCCAAGTCCAACAGGTCATTATTCTGGTATTCATAACCGCACTTCACCCCAGCAAGTAATGCGATATTTAA
ACCGTTTATCAGGTCCTTTTCTTGATCGTTTCGATTTATCTATTGAAGTGCCTTTACTACCCAAAGGAACATTACAAAAT
ACGAATGAGCGTGGAGAAACTAGCGAAGAAGTGAGAAATAAAGTGTTAAAAATACGGGAAATTCAACTTACAAGAGCAGG
GAAAGTTAATGCTTATTTAACGAGCAAAGAAATCGAAAAATATTGTCGGTTATCAAAAGATAATGCTTTCTTTCTAGAAA
ATGCTTTGACTAAGTTAGGCTTATCGGTTCGCGCTTATCATCGCATATTAAAAGTCGCTCGTACTATCGCTGATCTAGCA
GAAGAAAAAGATATAGCTCAACCTCATATTGCCGAAGCATTAGGATATCGGGCAATGGATCGATTATTACAGAAATTATC
TAATAACCTTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R2MXQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

81.961

100

0.82
  comM Glaesserella parasuis strain SC1401

76.923

99.412

0.765
  comM Vibrio cholerae strain A1552

65.286

99.412

0.649
  comM Vibrio campbellii strain DS40M4

64.103

99.412

0.637
  comM Legionella pneumophila str. Paris

49.702

98.627

0.49
  comM Legionella pneumophila strain ERS1305867

49.702

98.627

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.368

100

0.476

Multiple sequence alignment