Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BA953_RS10810 | Genome accession | NZ_CP016556 |
| Coordinates | 2354436..2354984 (+) | Length | 182 a.a. |
| NCBI ID | WP_006958299.1 | Uniprot ID | A0A097QHM9 |
| Organism | Vibrio coralliilyticus strain 58 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2349436..2359984
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BA953_RS10795 (BA953_10795) | uvrA | 2349555..2352377 (-) | 2823 | WP_065741108.1 | excinuclease ABC subunit UvrA | - |
| BA953_RS10800 (BA953_10800) | galU | 2352517..2353389 (-) | 873 | WP_006958301.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| BA953_RS10805 (BA953_10805) | qstR | 2353507..2354154 (-) | 648 | WP_006958300.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| BA953_RS10810 (BA953_10810) | ssb | 2354436..2354984 (+) | 549 | WP_006958299.1 | single-stranded DNA-binding protein | Machinery gene |
| BA953_RS10815 (BA953_10815) | csrD | 2355132..2357147 (+) | 2016 | WP_006958298.1 | RNase E specificity factor CsrD | - |
| BA953_RS10820 (BA953_10820) | - | 2357144..2358583 (+) | 1440 | WP_065741109.1 | MSHA biogenesis protein MshI | - |
| BA953_RS10825 (BA953_10825) | gspM | 2358583..2359233 (+) | 651 | WP_038509426.1 | type II secretion system protein GspM | - |
| BA953_RS10830 (BA953_10830) | - | 2359226..2359549 (+) | 324 | WP_065741110.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20140.20 Da Isoelectric Point: 4.9269
>NTDB_id=189161 BA953_RS10810 WP_006958299.1 2354436..2354984(+) (ssb) [Vibrio coralliilyticus strain 58]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVSLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPGQSMGQPQQQGGWGQPQQPAMQQSQPAQAQQPYSQPQ
QQNQNQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVSLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPGQSMGQPQQQGGWGQPQQPAMQQSQPAQAQQPYSQPQ
QQNQNQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 549 bp
>NTDB_id=189161 BA953_RS10810 WP_006958299.1 2354436..2354984(+) (ssb) [Vibrio coralliilyticus strain 58]
ATGGCGAGCCGTGGAGTCAACAAAGTTATTTTAGTCGGTAATCTGGGATCAGATCCGGAAGTACGTTATATGCCAAGCGG
TGGCGCTGTAGCAAACATCACGATTGCGACGTCTGAAAGCTGGCGTGATAAAGCAACAGGTGAGCAACGCGAAAAAACAG
AGTGGCACCGTGTATCTCTGTTTGGCAAGCTGGCTGAAGTTGCTGGTGAGTACTTACGTAAAGGTTCTCAGGTTTATATT
GAAGGTCAACTGCAGACACGTAAATGGCAAGACCAGAATGGTCAGGACCGCTATAGCACTGAAGTTGTGGTTCAAGGGTT
TAATGGTGTTATGCAGATGCTAGGTGGTCGTGCTCAAGGTGGCGCACCGGGTCAATCAATGGGCCAGCCTCAGCAGCAAG
GTGGTTGGGGTCAACCTCAGCAGCCAGCAATGCAACAAAGCCAACCTGCTCAGGCTCAGCAACCATACTCTCAGCCTCAA
CAGCAGAACCAAAATCAGCCTCAGTATAATGAGCCACCAATGGATTTTGATGACGATATCCCATTCTAA
ATGGCGAGCCGTGGAGTCAACAAAGTTATTTTAGTCGGTAATCTGGGATCAGATCCGGAAGTACGTTATATGCCAAGCGG
TGGCGCTGTAGCAAACATCACGATTGCGACGTCTGAAAGCTGGCGTGATAAAGCAACAGGTGAGCAACGCGAAAAAACAG
AGTGGCACCGTGTATCTCTGTTTGGCAAGCTGGCTGAAGTTGCTGGTGAGTACTTACGTAAAGGTTCTCAGGTTTATATT
GAAGGTCAACTGCAGACACGTAAATGGCAAGACCAGAATGGTCAGGACCGCTATAGCACTGAAGTTGTGGTTCAAGGGTT
TAATGGTGTTATGCAGATGCTAGGTGGTCGTGCTCAAGGTGGCGCACCGGGTCAATCAATGGGCCAGCCTCAGCAGCAAG
GTGGTTGGGGTCAACCTCAGCAGCCAGCAATGCAACAAAGCCAACCTGCTCAGGCTCAGCAACCATACTCTCAGCCTCAA
CAGCAGAACCAAAATCAGCCTCAGTATAATGAGCCACCAATGGATTTTGATGACGATATCCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
80.978 |
100 |
0.819 |
| ssb | Glaesserella parasuis strain SC1401 |
55.44 |
100 |
0.588 |
| ssb | Neisseria meningitidis MC58 |
44.865 |
100 |
0.456 |
| ssb | Neisseria gonorrhoeae MS11 |
45.604 |
100 |
0.456 |