Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BA953_RS08915 Genome accession   NZ_CP016556
Coordinates   1963838..1965361 (-) Length   507 a.a.
NCBI ID   WP_065740941.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain 58     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1958838..1970361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA953_RS08895 (BA953_08895) - 1959637..1960257 (+) 621 WP_006957502.1 thiol:disulfide interchange protein DsbA/DsbL -
  BA953_RS08900 (BA953_08900) - 1960301..1961626 (-) 1326 WP_065740940.1 IS4 family transposase -
  BA953_RS08905 (BA953_08905) - 1961754..1962638 (-) 885 WP_006957501.1 acyltransferase -
  BA953_RS08910 (BA953_08910) - 1962822..1963805 (+) 984 WP_043009574.1 DUF2860 domain-containing protein -
  BA953_RS08915 (BA953_08915) comM 1963838..1965361 (-) 1524 WP_065740941.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BA953_RS08920 (BA953_08920) ilvG 1965866..1967512 (+) 1647 WP_019273988.1 acetolactate synthase 2 catalytic subunit -
  BA953_RS08925 (BA953_08925) ilvM 1967514..1967798 (+) 285 WP_006957495.1 acetolactate synthase 2 small subunit -
  BA953_RS08930 (BA953_08930) ilvE 1967811..1968755 (+) 945 WP_065740942.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55128.20 Da        Isoelectric Point: 7.5537

>NTDB_id=189155 BA953_RS08915 WP_065740941.1 1963838..1965361(-) (comM) [Vibrio coralliilyticus strain 58]
MGLAIIYSRASVGVEAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIPVSGLAEKEFVGELALSGELRGVKGVLPAALAANKAQRSLVVPHYNGDQAALVGEEQHKSAQSL
LEVCADLCGQQKLSLHQTQNLHRAVDNGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
DEAMETASVASLTQQEINALNWKRRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQSRVNPQTILRYLSRLSGPLLDRFDMSLEIPALPKGTLAEGGER
GEPTEVVKQRVINARACMLERSNKVNALLGSREIEEYCPLKKEDAQFLESALHRLGLSIRAYHRIIKVARTIADLDGQSQ
IARHHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=189155 BA953_RS08915 WP_065740941.1 1963838..1965361(-) (comM) [Vibrio coralliilyticus strain 58]
ATGGGCTTAGCCATTATTTACAGTCGGGCATCGGTGGGGGTTGAAGCGCCACCTGTGACGGTAGAGGTGCATATCAGTAA
TGGAATGCCGGGGTTCACTCTGGTGGGATTACCGGAAACCACTGTTAAAGAATCACGCGACCGAGTGCGCAGTGCGATCA
TCAACTCTCGATTTGAGTTCCCAGCCAAGCGAATCACGGTCAATCTTGCACCCGCCGATCTGCCCAAGGAGGGAGGGCGC
TTTGATCTGCCGATTGCACTAGGCATTCTCGCCGCTTCAGAGCAGATCCCAGTCAGCGGCTTGGCAGAAAAAGAGTTCGT
TGGTGAACTGGCTTTGTCGGGGGAACTGCGAGGAGTGAAAGGAGTATTGCCTGCAGCGCTGGCAGCCAACAAAGCACAGC
GAAGCTTGGTTGTACCTCATTACAACGGAGATCAAGCCGCGTTAGTGGGTGAAGAACAGCATAAATCTGCCCAAAGCTTA
TTAGAAGTGTGCGCCGATCTTTGCGGCCAACAAAAGCTTAGCCTGCATCAAACACAAAATCTGCACCGAGCGGTGGATAA
TGGCCGCGACTTACAAGACATCATTGGTCAGCAGCAAGGTAAACGTGCTTTGGAGATTGCCGCGGCAGGTAACCACAACT
TGTTATTTTTAGGCCCGCCTGGGACGGGGAAAACCATGCTTGCCTCGCGTTTGTGCGATTTGCTGCCGGAAATGAGTGAC
GACGAAGCAATGGAAACGGCGTCTGTTGCGTCGCTGACTCAGCAGGAGATTAATGCGCTCAACTGGAAGCGGCGTCCCTT
TCGTGCTCCGCACCATTCAAGCTCAATGGCAGCGCTCGTCGGCGGAGGCACGATCCCAAGACCGGGTGAAATTTCGTTGG
CCCACAATGGGTTGCTGTTTCTTGATGAAATGCCAGAGTTTGAACGTAAGGTGCTTGACTCATTGCGTGAGCCGCTGGAG
TCCGGGGAGATTATTATCTCGCGTGCTCAGGGTAAAACTCGCTTCCCTGCACGCTTTCAGCTGGTGGGCGCTCTTAACCC
GAGTCCGACGGGGTATTACGAAGGTAATCAGTCGAGAGTTAATCCACAAACCATTTTACGTTATCTGAGTCGGCTATCTG
GCCCTTTACTGGATCGCTTTGATATGTCACTTGAGATCCCTGCTTTGCCTAAAGGTACTTTGGCCGAAGGGGGCGAGCGT
GGTGAACCTACAGAAGTAGTTAAGCAAAGGGTTATCAATGCCAGAGCCTGTATGCTGGAGCGCTCCAATAAGGTTAATGC
ACTGTTGGGCAGTCGCGAAATAGAGGAGTACTGTCCATTGAAAAAAGAAGATGCGCAGTTTTTGGAGAGTGCGTTGCACC
GACTTGGGTTGTCAATTCGGGCTTATCACCGAATCATCAAGGTCGCGCGCACAATTGCTGATTTAGATGGTCAGTCGCAG
ATTGCTCGCCATCATCTGGCTGAAGCGTTGGGATATCGGGCAATGGACCGATTGCTTAAGCAATTGACCGCTCAGGCGGT
GTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

86.982

100

0.87
  comM Vibrio campbellii strain DS40M4

86.391

100

0.864
  comM Haemophilus influenzae Rd KW20

66.469

100

0.665
  comM Glaesserella parasuis strain SC1401

64.133

100

0.649
  comM Legionella pneumophila str. Paris

50.402

98.225

0.495
  comM Legionella pneumophila strain ERS1305867

50.402

98.225

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.913

100

0.43

Multiple sequence alignment