Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   BBH51_RS00475 Genome accession   NZ_CP016553
Coordinates   97729..98058 (-) Length   109 a.a.
NCBI ID   WP_005539279.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain IDH781     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 92729..103058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBH51_RS00450 (BBH51_00450) serA 93485..94717 (-) 1233 WP_005539290.1 phosphoglycerate dehydrogenase -
  BBH51_RS00455 (BBH51_00455) rpiA 94737..95393 (-) 657 WP_005539288.1 ribose-5-phosphate isomerase RpiA -
  BBH51_RS00460 (BBH51_00460) hemW 95492..96661 (-) 1170 WP_005539285.1 radical SAM family heme chaperone HemW -
  BBH51_RS00465 (BBH51_00465) - 96661..96984 (-) 324 WP_005539283.1 YbjQ family protein -
  BBH51_RS00470 (BBH51_00470) rdgB 97023..97616 (-) 594 WP_005554912.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  BBH51_RS00475 (BBH51_00475) comE1/comEA 97729..98058 (-) 330 WP_005539279.1 ComEA family DNA-binding protein Machinery gene
  BBH51_RS00480 (BBH51_00480) ispH 98649..99593 (-) 945 WP_005538061.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BBH51_RS00485 (BBH51_00485) lspA 99593..100087 (-) 495 WP_005538058.1 signal peptidase II -
  BBH51_RS00490 (BBH51_00490) ileS 100167..102989 (-) 2823 WP_005538052.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11355.12 Da        Isoelectric Point: 9.6912

>NTDB_id=189117 BBH51_RS00475 WP_005539279.1 97729..98058(-) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain IDH781]
MKAMKHLLASLFVLGSVFAGSAVAAEKAAEPAVQTEQPAATAAVGEKVNINTASAAEIQKALVGIGVKKAEAVVQYREKH
GNFSAVEQLLEVQGIGKATLDKNRDRIAL

Nucleotide


Download         Length: 330 bp        

>NTDB_id=189117 BBH51_RS00475 WP_005539279.1 97729..98058(-) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain IDH781]
ATGAAAGCAATGAAACATCTTTTGGCTTCGCTGTTCGTGTTAGGTTCGGTGTTTGCGGGTTCTGCCGTGGCGGCGGAAAA
AGCGGCTGAACCGGCGGTACAAACGGAGCAACCGGCGGCAACGGCAGCGGTCGGTGAGAAAGTGAATATTAACACCGCCA
GTGCTGCGGAAATTCAAAAAGCCCTTGTAGGCATCGGTGTGAAAAAAGCGGAAGCGGTAGTGCAGTATCGTGAAAAACAC
GGTAATTTCAGCGCCGTGGAGCAGTTGCTGGAAGTGCAAGGCATCGGCAAAGCGACCTTAGACAAAAATCGCGACCGTAT
CGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

59.091

100

0.596
  comEA/comE1 Glaesserella parasuis strain SC1401

51.754

100

0.541
  comEA Vibrio parahaemolyticus RIMD 2210633

44.34

97.248

0.431
  comEA Vibrio cholerae C6706

39.623

97.248

0.385
  comEA Vibrio cholerae strain A1552

39.623

97.248

0.385

Multiple sequence alignment