Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BSY19_RS18645 Genome accession   NZ_CP016464
Coordinates   3214135..3214677 (-) Length   180 a.a.
NCBI ID   WP_069055450.1    Uniprot ID   A0A1B3NKF7
Organism   Bosea sp. RAC05     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3209135..3219677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSY19_RS18620 (BSY19_3038) - 3209736..3210692 (+) 957 WP_069055445.1 ABC transporter permease -
  BSY19_RS18625 (BSY19_3039) - 3210724..3211665 (+) 942 WP_069055446.1 substrate-binding domain-containing protein -
  BSY19_RS18630 (BSY19_3040) - 3211801..3212565 (+) 765 WP_069055447.1 ATP-binding cassette domain-containing protein -
  BSY19_RS18635 (BSY19_3041) - 3212570..3213505 (+) 936 WP_069055448.1 nucleoside hydrolase -
  BSY19_RS18640 (BSY19_3042) - 3213525..3214046 (+) 522 WP_069055449.1 hypothetical protein -
  BSY19_RS18645 (BSY19_3043) ssb 3214135..3214677 (-) 543 WP_069055450.1 single-stranded DNA-binding protein Machinery gene
  BSY19_RS18650 (BSY19_3044) - 3214859..3215437 (-) 579 WP_069055451.1 DinB family protein -
  BSY19_RS18655 (BSY19_3045) - 3215505..3216308 (-) 804 WP_069055452.1 DUF2189 domain-containing protein -
  BSY19_RS18660 (BSY19_3046) - 3216418..3217650 (-) 1233 WP_069055453.1 MFS transporter -
  BSY19_RS18665 (BSY19_3047) - 3217872..3219053 (+) 1182 WP_069055454.1 aminotransferase class V-fold PLP-dependent enzyme -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19370.43 Da        Isoelectric Point: 7.2054

>NTDB_id=188395 BSY19_RS18645 WP_069055450.1 3214135..3214677(-) (ssb) [Bosea sp. RAC05]
MAGSVNKVILVGNLGRDPEVRRLGSGEPVVNLRIATSETWRDKQSGEKKERTEWHSVVIFNENLAKVAEQYLKKGSKIYI
EGQLQTRKWQDQSGVEKYTTEIVLQRYRGELTILDSRGQGGSDEYGEGGGMMEDRSSGSSFGRSGPMGGGGGGSRQPAMA
GGGGGASRSSSSHLDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=188395 BSY19_RS18645 WP_069055450.1 3214135..3214677(-) (ssb) [Bosea sp. RAC05]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTCGGGCGCGACCCGGAGGTCCGCCGCCTCGGCTCGGGCGA
GCCGGTCGTCAATCTGCGCATCGCCACCTCGGAAACCTGGCGCGACAAGCAGTCGGGCGAGAAGAAGGAGCGCACCGAGT
GGCACTCGGTCGTGATCTTCAACGAGAACCTCGCCAAGGTCGCCGAGCAGTATCTGAAGAAGGGCTCGAAGATCTATATC
GAGGGCCAGCTCCAGACTCGCAAATGGCAGGACCAGTCGGGCGTCGAGAAATACACCACCGAAATCGTGCTGCAGCGCTA
TCGCGGCGAACTGACCATTCTCGACAGCCGCGGCCAGGGCGGCTCGGACGAGTATGGCGAGGGCGGCGGCATGATGGAGG
ATCGCTCCTCCGGCTCGTCCTTCGGCCGCTCGGGCCCGATGGGCGGCGGTGGCGGCGGTTCGCGCCAGCCGGCGATGGCC
GGTGGTGGCGGCGGCGCCTCGCGCTCCTCCTCGAGCCATCTCGACGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B3NKF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.444

100

0.494
  ssb Glaesserella parasuis strain SC1401

43.915

100

0.461
  ssb Neisseria gonorrhoeae MS11

40.323

100

0.417
  ssb Neisseria meningitidis MC58

39.785

100

0.411

Multiple sequence alignment