Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BSY239_RS19025 Genome accession   NZ_CP016449
Coordinates   4084619..4086169 (-) Length   516 a.a.
NCBI ID   WP_069048180.1    Uniprot ID   A0A1B3LWV0
Organism   Hydrogenophaga sp. RAC07     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4079619..4091169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSY239_RS19010 (BSY239_3851) metH 4079830..4082577 (+) 2748 WP_083240072.1 methionine synthase -
  BSY239_RS19015 (BSY239_3852) - 4082664..4083065 (+) 402 WP_083240224.1 DoxX family protein -
  BSY239_RS19020 (BSY239_3853) - 4083084..4084523 (-) 1440 WP_069048179.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  BSY239_RS19025 (BSY239_3854) comM 4084619..4086169 (-) 1551 WP_069048180.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BSY239_RS19030 (BSY239_3855) glnK 4086566..4086904 (+) 339 WP_056264790.1 P-II family nitrogen regulator -
  BSY239_RS19035 (BSY239_3856) - 4086936..4088378 (+) 1443 WP_069048181.1 ammonium transporter -
  BSY239_RS19040 (BSY239_3857) - 4088556..4088780 (+) 225 WP_069048182.1 hypothetical protein -
  BSY239_RS19045 (BSY239_3858) glcE 4088918..4090042 (+) 1125 WP_069048183.1 glycolate oxidase subunit GlcE -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 54128.84 Da        Isoelectric Point: 8.0165

>NTDB_id=188367 BSY239_RS19025 WP_069048180.1 4084619..4086169(-) (comM) [Hydrogenophaga sp. RAC07]
MGLSLVRSRALLGLDARPVQVEVHLANGLPSFTLVGLADTEVKEARERVRSAIANAGLEFPSNKKITVNLAPADLPKDSG
RFDLPIALGILAASGQISAARLADWEFAGELSLGGELRPVRGALAMSLALHRDAGPDASNARLVLPPGSAEEAALVPQAR
VYRARHLLDVIARFLPESASTAEPPDDGGWARLSAHTIGEAPALADLADVKGQSAARRALEIAAAGGHSVLMAGPPGSGK
SMLAHRFAGLLPPMSTLEALESAAVASLAGRFDLARWGQRPTCAPHHSASAVALVGGGSPPRPGEISLAHHGVLFLDELP
EFPRAALEALREPLESGHIRISRAAMQTEFPARFQLVAAMNPCPCGFLGHPTRACRCTPDQVARYQAKLSGPLLDRIDLH
VEVPALPPENLCTHQPGESSVCVRERVTAARDRAQARQGSANQALAGRALDEHAQAEALAVKFLHTAAARLGWSARGTHR
ALRVARTIADLAGSDTVGVAHIAEAVQYRRVVTPGG

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=188367 BSY239_RS19025 WP_069048180.1 4084619..4086169(-) (comM) [Hydrogenophaga sp. RAC07]
ATGGGACTGTCATTGGTGCGCAGCCGCGCGCTGCTCGGGCTGGACGCCAGGCCGGTGCAGGTGGAAGTGCATCTGGCCAA
CGGCCTGCCCAGCTTCACCCTCGTGGGCCTGGCAGACACCGAGGTGAAAGAGGCCCGCGAACGCGTGCGTTCGGCCATCG
CCAACGCGGGGCTGGAATTTCCGTCCAACAAGAAGATCACGGTCAACCTGGCCCCGGCCGACCTGCCCAAGGACTCGGGC
CGCTTCGATTTGCCCATTGCGCTGGGCATCCTGGCGGCCAGCGGGCAGATCAGCGCGGCGCGGCTGGCTGACTGGGAATT
CGCTGGCGAACTCTCCCTGGGCGGTGAACTGCGCCCGGTGCGCGGCGCGCTCGCCATGAGCCTGGCGCTGCACCGCGACG
CCGGCCCTGACGCCAGCAACGCCCGGCTCGTGCTGCCGCCGGGCAGCGCCGAAGAAGCCGCGCTGGTGCCACAGGCCCGG
GTCTACCGGGCGCGCCACCTGCTCGATGTGATTGCCCGCTTTCTCCCCGAGAGCGCATCCACGGCCGAGCCGCCCGACGA
CGGCGGTTGGGCGCGGCTTTCGGCGCATACGATCGGGGAAGCGCCTGCGCTGGCGGATCTGGCCGACGTCAAAGGCCAGA
GCGCCGCCCGCCGCGCGCTGGAGATCGCGGCCGCTGGTGGCCACAGCGTCTTGATGGCCGGGCCGCCCGGGTCCGGCAAG
TCCATGCTGGCCCACCGTTTTGCGGGCTTGTTGCCGCCCATGAGCACGCTGGAGGCGCTCGAATCCGCAGCGGTGGCCTC
GCTGGCCGGGCGGTTCGATCTGGCGCGCTGGGGACAGCGGCCCACCTGCGCGCCGCACCACAGCGCCAGCGCGGTGGCGC
TGGTGGGGGGTGGCTCGCCGCCGAGGCCGGGCGAGATTTCGCTCGCGCACCACGGCGTGTTGTTTCTCGACGAACTCCCC
GAATTTCCCCGCGCCGCGCTGGAGGCCCTGCGCGAGCCGCTGGAAAGCGGGCACATCCGCATCTCGCGCGCGGCCATGCA
GACCGAGTTCCCGGCGCGCTTTCAGCTGGTGGCCGCCATGAACCCCTGCCCCTGCGGCTTTCTGGGCCACCCCACCCGTG
CCTGCCGCTGCACACCCGACCAGGTGGCGCGCTACCAGGCCAAGCTCAGCGGCCCACTGCTGGACCGCATCGACCTGCAC
GTGGAGGTGCCGGCGCTGCCGCCGGAGAACCTGTGCACCCACCAGCCGGGCGAATCGAGCGTCTGCGTGCGCGAGCGTGT
GACCGCGGCGAGGGACCGTGCGCAGGCCCGCCAGGGTTCGGCCAACCAGGCCCTGGCAGGGCGCGCGCTCGACGAACACG
CCCAGGCCGAAGCCTTGGCCGTCAAGTTCCTGCACACCGCGGCCGCGCGCCTGGGCTGGAGCGCGCGCGGCACCCACCGC
GCCCTGCGGGTGGCGCGCACCATCGCCGACCTCGCGGGCAGCGACACGGTGGGCGTGGCGCACATCGCCGAAGCGGTGCA
GTACCGGCGGGTGGTCACACCGGGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(417-509)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(206-409)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B3LWV0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

50.584

99.612

0.504
  comM Legionella pneumophila strain ERS1305867

50.584

99.612

0.504
  comM Haemophilus influenzae Rd KW20

50.485

99.806

0.504
  comM Vibrio campbellii strain DS40M4

50.391

99.225

0.5
  comM Vibrio cholerae strain A1552

50.489

99.031

0.5
  comM Glaesserella parasuis strain SC1401

49.031

100

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.524

99.806

0.424

Multiple sequence alignment