Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BBN53_RS08005 Genome accession   NZ_CP016440
Coordinates   1771974..1773476 (+) Length   500 a.a.
NCBI ID   WP_043207770.1    Uniprot ID   -
Organism   Bordetella pseudohinzii strain HI4681     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1766974..1778476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBN53_RS07980 (BBN53_07980) - 1767259..1768557 (-) 1299 WP_043207763.1 MFS transporter -
  BBN53_RS07985 (BBN53_07985) - 1768642..1769247 (+) 606 WP_043207765.1 TetR/AcrR family transcriptional regulator -
  BBN53_RS07990 (BBN53_07990) amt 1769332..1770570 (-) 1239 WP_043207768.1 ammonium transporter -
  BBN53_RS07995 (BBN53_07995) - 1770620..1770958 (-) 339 WP_029579579.1 P-II family nitrogen regulator -
  BBN53_RS08000 (BBN53_08000) - 1771617..1771880 (+) 264 WP_109842431.1 accessory factor UbiK family protein -
  BBN53_RS08005 (BBN53_08005) comM 1771974..1773476 (+) 1503 WP_043207770.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BBN53_RS08010 (BBN53_08010) rpmI 1773793..1773990 (+) 198 WP_006387997.1 50S ribosomal protein L35 -
  BBN53_RS08015 (BBN53_08015) rplT 1774006..1774365 (+) 360 WP_043207774.1 50S ribosomal protein L20 -
  BBN53_RS08020 (BBN53_08020) pheS 1774439..1775461 (+) 1023 WP_043207775.1 phenylalanine--tRNA ligase subunit alpha -
  BBN53_RS08025 (BBN53_08025) pheT 1775474..1777891 (+) 2418 WP_043207777.1 phenylalanine--tRNA ligase subunit beta -
  BBN53_RS08030 (BBN53_08030) - 1777894..1778244 (+) 351 WP_109842442.1 integration host factor subunit alpha -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52237.23 Da        Isoelectric Point: 9.1205

>NTDB_id=188285 BBN53_RS08005 WP_043207770.1 1771974..1773476(+) (comM) [Bordetella pseudohinzii strain HI4681]
MTLAMLNSRALAGLQTPIVRVEAHVGPGLPAFCIVGLPDLEVRESRERVRAAIVNSGFDFPVGRVTINLSPGDLPKASSR
FDLPIALCILAASGQVAPAAQADRLVLAGELSLSGALVPVADPLALALGVARDPGVSALILPEASAAQAARVPGLRVLSA
RCLTEAAAHLAGQADLPVAQPPPRPAVAPGPCLSDVRGQAGARRALEIAAAGGHSMLMSGPPGAGKSMLAQRLPGLLPAL
DDAAALEAAAIARLAGSADPPFGLPPFRAPHHGATAAALAGGGTPPRPGEISLAHQGVLFLDELPEFERRALQALREPME
TGEVSLSRASGRLCFPARFQLVAAMNPCPCGWRGHPARPCRCTPEQVARYADRIGGPLRDRIDLHLWLPPVDPDCLAGPP
GETSEAVRERVRACRERQWRRQGRLNAQLDGEALARHASLDHATGGWFAQAMRRLGASARASHRVLRVARSVADLAGDTR
IGRPHLAEALRFRETPKPGA

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=188285 BBN53_RS08005 WP_043207770.1 1771974..1773476(+) (comM) [Bordetella pseudohinzii strain HI4681]
ATGACGCTTGCCATGCTCAACAGCCGCGCCCTGGCCGGCCTGCAGACGCCCATCGTGCGCGTCGAGGCCCATGTGGGGCC
GGGCCTGCCCGCCTTCTGCATCGTCGGCCTGCCTGACCTCGAAGTGCGCGAGAGCCGCGAGCGGGTGAGGGCGGCCATCG
TCAACAGCGGCTTTGACTTCCCGGTCGGCCGCGTGACCATCAATCTGTCGCCGGGCGATCTGCCCAAGGCGTCTTCGCGT
TTCGATCTCCCCATCGCCCTATGCATCCTGGCGGCCTCCGGCCAGGTGGCGCCCGCGGCGCAGGCCGACCGCCTGGTGCT
GGCCGGCGAGTTGTCGCTGTCCGGGGCGCTGGTGCCGGTGGCCGACCCGCTGGCCCTGGCCTTGGGGGTGGCGCGCGACC
CCGGCGTGAGCGCGCTCATCCTGCCCGAGGCCAGCGCCGCCCAGGCGGCGCGGGTGCCGGGCCTGCGGGTGCTGTCGGCG
CGCTGTCTGACCGAGGCCGCGGCGCATCTGGCCGGGCAGGCCGATTTGCCTGTCGCCCAGCCGCCGCCCCGGCCGGCCGT
CGCGCCCGGGCCCTGCCTGTCCGATGTCCGCGGGCAGGCCGGGGCGCGCCGCGCCCTCGAAATCGCGGCGGCCGGCGGCC
ACAGCATGCTCATGAGCGGGCCGCCTGGCGCCGGCAAGAGCATGCTGGCCCAGCGCCTGCCCGGCCTGCTGCCCGCCCTG
GACGACGCCGCCGCCCTGGAGGCGGCCGCCATCGCCCGCCTGGCCGGCAGCGCCGACCCGCCCTTCGGGCTGCCGCCGTT
TCGCGCGCCCCATCATGGTGCCACCGCCGCGGCCCTGGCCGGGGGAGGGACGCCGCCGCGGCCCGGGGAAATCTCCCTGG
CGCACCAGGGCGTGCTCTTTCTCGATGAGCTGCCCGAGTTCGAGCGCCGCGCCTTGCAGGCGCTGCGCGAACCCATGGAA
ACCGGCGAGGTGAGCCTGTCGCGCGCCTCGGGGCGTTTGTGTTTTCCGGCGCGTTTTCAGCTGGTGGCCGCCATGAATCC
CTGCCCCTGCGGCTGGCGCGGCCATCCCGCGCGGCCCTGCCGCTGCACGCCGGAGCAGGTGGCGCGCTATGCCGATCGCA
TCGGCGGGCCGCTGCGCGACCGCATAGACCTGCATCTCTGGCTGCCGCCGGTCGATCCCGATTGCCTGGCCGGGCCGCCG
GGCGAGACCTCGGAGGCGGTGCGCGAGCGGGTGCGCGCCTGCCGCGAGCGGCAATGGCGGCGTCAGGGGCGCCTGAATGC
CCAGCTCGACGGGGAGGCGCTGGCCCGTCATGCGTCCCTGGATCATGCGACGGGCGGCTGGTTCGCGCAGGCCATGCGGC
GCCTGGGCGCTTCGGCCCGCGCCAGCCACCGGGTGCTGCGGGTGGCCCGCAGCGTGGCCGACCTGGCCGGCGACACCCGG
ATCGGACGGCCGCACCTGGCCGAGGCGCTGCGTTTCCGCGAGACGCCCAAGCCCGGCGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-144)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.795

99.6

0.486
  comM Vibrio campbellii strain DS40M4

47.39

99.6

0.472
  comM Haemophilus influenzae Rd KW20

44.622

100

0.448
  comM Glaesserella parasuis strain SC1401

44.444

100

0.448
  comM Legionella pneumophila str. Paris

43.452

100

0.438
  comM Legionella pneumophila strain ERS1305867

43.452

100

0.438
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

40.594

100

0.41

Multiple sequence alignment