Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/nlmT   Type   Regulator
Locus tag   BAY21_RS06450 Genome accession   NZ_CP016439
Coordinates   1204890..1207043 (+) Length   717 a.a.
NCBI ID   WP_065429506.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS8     
Function   transport of ComC (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1175368..1258471 1204890..1207043 within 0


Gene organization within MGE regions


Location: 1175368..1258471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAY21_RS06330 (BAY21_06330) addA 1176535..1180188 (+) 3654 WP_011227531.1 helicase-exonuclease AddAB subunit AddA -
  BAY21_RS06335 (BAY21_06335) - 1180582..1181315 (-) 734 Protein_1181 DUF554 domain-containing protein -
  BAY21_RS06340 (BAY21_06340) - 1181589..1182321 (+) 733 Protein_1182 ABC transporter ATP-binding protein -
  BAY21_RS06345 (BAY21_06345) - 1182324..1183913 (+) 1590 WP_011226516.1 hypothetical protein -
  BAY21_RS06350 (BAY21_06350) proB 1184034..1184837 (+) 804 WP_002948808.1 glutamate 5-kinase -
  BAY21_RS06355 (BAY21_06355) - 1184839..1186089 (+) 1251 WP_011226515.1 glutamate-5-semialdehyde dehydrogenase -
  BAY21_RS06360 (BAY21_06360) - 1186441..1186737 (+) 297 WP_231108735.1 hypothetical protein -
  BAY21_RS06365 (BAY21_06365) - 1186957..1187313 (+) 357 WP_011226513.1 DUF805 domain-containing protein -
  BAY21_RS10395 - 1187587..1187841 (+) 255 WP_011227529.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  BAY21_RS11120 (BAY21_06375) - 1187952..1188338 (+) 387 WP_041827096.1 hypothetical protein -
  BAY21_RS11125 (BAY21_06380) - 1188335..1188499 (+) 165 WP_231108736.1 hypothetical protein -
  BAY21_RS11130 (BAY21_06385) - 1188596..1188946 (+) 351 WP_011227526.1 hypothetical protein -
  BAY21_RS06390 (BAY21_06390) rsmH 1189114..1190064 (+) 951 WP_002888254.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  BAY21_RS06395 (BAY21_06395) ftsL 1190067..1190387 (+) 321 WP_011226509.1 cell division protein FtsL -
  BAY21_RS06400 (BAY21_06400) pbp2X 1190391..1192658 (+) 2268 WP_011226508.1 penicillin-binding protein PBP2X -
  BAY21_RS06405 (BAY21_06405) mraY 1192660..1193682 (+) 1023 WP_011227524.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  BAY21_RS06410 (BAY21_06410) - 1193757..1195100 (+) 1344 WP_002948888.1 DEAD/DEAH box helicase -
  BAY21_RS06415 (BAY21_06415) - 1195948..1197303 (+) 1356 WP_011227523.1 bifunctional metallophosphatase/5'-nucleotidase -
  BAY21_RS06420 (BAY21_06420) - 1197358..1198080 (+) 723 WP_011226505.1 YutD family protein -
  BAY21_RS06425 (BAY21_06425) rlmN 1198084..1199253 (+) 1170 WP_011227522.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  BAY21_RS06430 (BAY21_06430) - 1199255..1199782 (+) 528 WP_011227521.1 VanZ family protein -
  BAY21_RS11135 (BAY21_06435) - 1199987..1200193 (+) 207 WP_002948879.1 hypothetical protein -
  BAY21_RS06440 (BAY21_06440) - 1200381..1202138 (+) 1758 WP_011226502.1 ABC transporter ATP-binding protein -
  BAY21_RS06445 (BAY21_06445) - 1202131..1203876 (+) 1746 WP_011226501.1 ABC transporter ATP-binding protein -
  BAY21_RS06450 (BAY21_06450) comA/nlmT 1204890..1207043 (+) 2154 WP_065429506.1 peptide cleavage/export ABC transporter Regulator
  BAY21_RS06455 (BAY21_06455) - 1207059..1208427 (+) 1369 Protein_1205 bacteriocin secretion accessory protein -
  BAY21_RS06460 (BAY21_06460) - 1208442..1208603 (+) 162 WP_011226496.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  BAY21_RS11140 - 1208621..1209424 (-) 804 WP_224103634.1 ATP-binding protein -
  BAY21_RS06470 (BAY21_06470) - 1209961..1210692 (-) 732 WP_002948869.1 LytR/AlgR family response regulator transcription factor -
  BAY21_RS06475 (BAY21_06475) - 1210942..1211184 (+) 243 WP_011227518.1 Blp family class II bacteriocin -
  BAY21_RS09965 - 1211330..1212720 (-) 1391 Protein_1210 IS3-like element ISSth1b family transposase -
  BAY21_RS06495 (BAY21_06495) - 1213163..1215430 (-) 2268 WP_011227515.1 Xaa-Pro dipeptidyl-peptidase -
  BAY21_RS06500 (BAY21_06500) gla 1215551..1216414 (+) 864 WP_002951781.1 aquaglyceroporin Gla -
  BAY21_RS06505 (BAY21_06505) - 1216588..1216863 (-) 276 WP_224103608.1 CPBP family intramembrane glutamic endopeptidase -
  BAY21_RS06510 (BAY21_06510) - 1217084..1218037 (-) 954 WP_041826943.1 IS30 family transposase -
  BAY21_RS06515 (BAY21_06515) - 1218390..1219145 (+) 756 WP_011681560.1 CppA family protein -
  BAY21_RS06520 (BAY21_06520) - 1219145..1220101 (+) 957 WP_002951776.1 serine hydrolase domain-containing protein -
  BAY21_RS06530 (BAY21_06530) - 1220303..1220953 (+) 651 WP_022096490.1 ABC transporter ATP-binding protein -
  BAY21_RS06535 (BAY21_06535) - 1220950..1221705 (+) 756 WP_002951770.1 ABC transporter permease -
  BAY21_RS06540 (BAY21_06540) - 1221781..1222467 (+) 687 WP_011227510.1 hypothetical protein -
  BAY21_RS06545 (BAY21_06545) - 1222555..1223149 (+) 595 Protein_1220 site-specific integrase -
  BAY21_RS11445 mobV 1223629..1224137 (+) 509 Protein_1221 MobV family relaxase -
  BAY21_RS06560 (BAY21_06560) - 1224183..1224485 (+) 303 WP_231108737.1 restriction endonuclease subunit S -
  BAY21_RS06565 (BAY21_06565) - 1224819..1225272 (-) 454 Protein_1223 GNAT family N-acetyltransferase -
  BAY21_RS06570 (BAY21_06570) - 1225323..1226105 (-) 783 Protein_1224 carbonic anhydrase -
  BAY21_RS06575 (BAY21_06575) pflB 1226372..1228681 (-) 2310 WP_011226473.1 formate C-acetyltransferase -
  BAY21_RS06580 (BAY21_06580) dinB 1228959..1230062 (+) 1104 WP_011227504.1 DNA polymerase IV -
  BAY21_RS06585 (BAY21_06585) - 1230315..1230581 (+) 267 WP_231108738.1 hypothetical protein -
  BAY21_RS06590 (BAY21_06590) - 1231162..1231989 (+) 828 WP_041827091.1 transporter substrate-binding domain-containing protein -
  BAY21_RS06595 (BAY21_06595) - 1232378..1233124 (+) 747 WP_095559509.1 amino acid ABC transporter permease -
  BAY21_RS06600 (BAY21_06600) - 1233124..1233867 (+) 744 WP_011226469.1 amino acid ABC transporter ATP-binding protein -
  BAY21_RS06605 (BAY21_06605) - 1234082..1234306 (+) 225 WP_011226468.1 DUF4059 family protein -
  BAY21_RS06610 (BAY21_06610) trxB 1234372..1235292 (+) 921 WP_011226467.1 thioredoxin-disulfide reductase -
  BAY21_RS06615 (BAY21_06615) rsmD 1235443..1235982 (+) 540 WP_002951741.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BAY21_RS06620 (BAY21_06620) coaD 1236016..1236513 (+) 498 WP_011226465.1 pantetheine-phosphate adenylyltransferase -
  BAY21_RS06625 (BAY21_06625) sepM 1236491..1237567 (+) 1077 WP_011226464.1 SepM family pheromone-processing serine protease Regulator
  BAY21_RS06630 (BAY21_06630) - 1237652..1238596 (+) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  BAY21_RS06635 (BAY21_06635) - 1238593..1239141 (+) 549 WP_004197152.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  BAY21_RS06640 (BAY21_06640) - 1239138..1239380 (+) 243 WP_011227499.1 hypothetical protein -
  BAY21_RS06645 (BAY21_06645) - 1239389..1241455 (+) 2067 WP_011227498.1 cation:proton antiporter -
  BAY21_RS06650 (BAY21_06650) - 1242074..1242856 (-) 783 WP_011226459.1 ABC transporter ATP-binding protein -
  BAY21_RS06655 (BAY21_06655) - 1242969..1244300 (+) 1332 WP_002951727.1 hemolysin family protein -
  BAY21_RS10650 - 1244998..1245108 (+) 111 WP_014621906.1 LPXTG cell wall anchor domain-containing protein -
  BAY21_RS06660 (BAY21_06660) pflA 1245296..1246096 (+) 801 WP_002946980.1 pyruvate formate-lyase-activating protein -
  BAY21_RS06665 (BAY21_06665) - 1246302..1246772 (+) 471 WP_011227497.1 membrane protein -
  BAY21_RS09980 - 1246988..1247559 (-) 572 Protein_1245 IS30 family transposase -
  BAY21_RS06675 (BAY21_06675) - 1247739..1248191 (-) 453 WP_002946987.1 universal stress protein -
  BAY21_RS06680 (BAY21_06680) - 1248546..1249760 (+) 1215 WP_011226456.1 pyridoxal phosphate-dependent aminotransferase -
  BAY21_RS06685 (BAY21_06685) codY 1250020..1250805 (+) 786 WP_002951720.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  BAY21_RS06690 (BAY21_06690) - 1250868..1251419 (+) 552 WP_002946999.1 cysteine hydrolase family protein -
  BAY21_RS06695 (BAY21_06695) - 1251542..1252390 (+) 849 WP_065429507.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  BAY21_RS06700 (BAY21_06700) msrA 1252402..1252911 (+) 510 WP_041827089.1 peptide-methionine (S)-S-oxide reductase MsrA -
  BAY21_RS06705 (BAY21_06705) - 1253064..1254505 (+) 1442 Protein_1252 6-phospho-beta-glucosidase -
  BAY21_RS09985 - 1254833..1255030 (+) 198 WP_231108739.1 glycosyltransferase -
  BAY21_RS06710 (BAY21_06710) - 1255043..1255297 (+) 255 WP_011226449.1 glycosyl transferase -
  BAY21_RS06715 (BAY21_06715) gatC 1255437..1255739 (+) 303 WP_002884769.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  BAY21_RS06720 (BAY21_06720) gatA 1255739..1257205 (+) 1467 WP_002946584.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence


Protein


Download         Length: 717 a.a.        Molecular weight: 80595.49 Da        Isoelectric Point: 6.7743

>NTDB_id=188263 BAY21_RS06450 WP_065429506.1 1204890..1207043(+) (comA/nlmT) [Streptococcus thermophilus strain CS8]
MFRFRRTFVPQIDMRNCGVAALALVAKYYGSDYSLAHLRELAKTNKEGTTALGLVEAAKKIGFETRAIKAEMSLFEMEDV
PYPFIAHVNKDGKLQHYYVIYKSTKDYLIIGDPDPSVKVTKMTKERFEKEWTGVTLFMGPEPSYKPHKDKKNGLWDFLPL
IFKQRSLIANIVFASLLVTLINILGSYYLQGILDEYVPNQMKSTLGIISIGLVVTYVLQQMMTFARDYLLTILSQRLTID
VILSYIRHIFELPMSFFATRRTGEVISRFSDANSIIDALASTILSLFLDFSIVIIVGGVLLIQNSNLFKLVLCSVPIYTL
IVFAFMKPFELMNHDVMQSNAMVNSAIIEDINGIETIKSLTSEEVCYQKIDGEFVDYLDNSFRLSKLSILQTSLKQGAQL
ILNVLILWTGAQLVMGNTISIGQLITFNMLLSYFTNPLENIINLQTKLQSAKVANTRLNEVYLIESEFGQSDDTYQEGIA
DGDITVTDLSYKYGFGRDTLTDVSLTIRQGEKISFVGVSGSGKTTLAKMLVNFYQPYKGYIDFNGQNISRIDKKTLRQHI
NYLPQQSYIFSGSVLENLTLGAARGITQADILKACEIAEIRQDIENMPMGFQTELSDGAGLSGGQKQRIALARALLTKSP
VLILDEATSGLDVLTEKQVIDNLLALKDKTIIFVAHRLSIAERTDRIVVIDQGRVVETGSHQDLMSYPGFYYQLFRK

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=188263 BAY21_RS06450 WP_065429506.1 1204890..1207043(+) (comA/nlmT) [Streptococcus thermophilus strain CS8]
ATGTTTCGTTTTCGTAGGACTTTTGTCCCTCAAATAGACATGAGGAATTGTGGAGTTGCTGCCTTGGCATTAGTGGCCAA
GTACTATGGTTCAGATTATTCATTAGCACATCTGCGTGAGTTGGCGAAGACCAATAAAGAAGGGACAACTGCCTTAGGTC
TTGTAGAGGCTGCTAAAAAAATTGGCTTTGAAACGAGAGCTATAAAGGCTGAAATGTCGCTCTTTGAGATGGAAGATGTT
CCTTATCCTTTTATTGCTCATGTTAATAAAGATGGGAAGCTTCAACATTATTATGTTATTTATAAAAGCACCAAGGATTA
TCTGATAATTGGAGACCCTGATCCAAGTGTAAAAGTAACTAAAATGACTAAAGAGCGTTTTGAGAAAGAGTGGACAGGTG
TTACTCTTTTTATGGGACCGGAACCCAGTTATAAACCACATAAGGATAAGAAAAATGGACTCTGGGACTTTCTCCCTTTG
ATCTTTAAACAAAGGTCCTTGATAGCTAATATTGTCTTTGCCAGTCTCTTGGTTACTTTAATAAATATTTTAGGTTCCTA
TTATTTACAAGGTATTCTAGACGAATATGTCCCTAATCAAATGAAGTCTACCTTAGGAATTATCTCAATTGGATTAGTTG
TGACCTATGTTTTACAACAAATGATGACTTTTGCAAGAGATTATCTCTTAACCATACTGAGTCAGCGATTGACCATTGAC
GTTATCTTGTCCTACATACGACATATCTTTGAACTCCCAATGTCTTTTTTTGCCACAAGACGTACAGGGGAGGTTATCTC
ACGTTTTAGTGATGCTAACTCTATTATCGATGCTCTGGCTTCGACGATATTATCACTTTTCCTTGATTTCTCTATTGTGA
TTATCGTAGGAGGCGTGTTATTGATACAAAATAGCAATCTCTTCAAGCTAGTTCTTTGTTCGGTTCCAATTTATACCCTT
ATCGTCTTTGCCTTTATGAAACCTTTTGAGCTAATGAATCATGACGTCATGCAGAGTAATGCTATGGTTAATTCAGCCAT
CATTGAGGACATTAATGGGATTGAAACCATAAAGTCACTAACCAGCGAAGAAGTATGCTATCAAAAGATTGATGGTGAGT
TTGTTGACTATCTAGACAATTCTTTTCGCCTTTCTAAGTTATCTATACTACAAACATCATTGAAACAAGGTGCTCAACTT
ATTTTAAATGTACTTATCCTCTGGACAGGTGCTCAGTTGGTGATGGGAAATACCATTTCGATAGGACAATTGATTACTTT
TAATATGTTGCTTTCTTACTTCACGAATCCTTTGGAAAATATCATTAACCTGCAAACCAAGTTACAGTCTGCTAAGGTAG
CTAATACTAGGCTCAATGAGGTCTATCTGATTGAATCAGAGTTTGGACAAAGTGATGATACCTATCAAGAAGGCATTGCG
GATGGAGATATCACTGTTACGGATTTATCTTATAAATATGGTTTTGGTCGTGATACTTTGACTGATGTCAGTTTGACGAT
TAGACAAGGAGAAAAAATCAGTTTTGTTGGTGTCAGTGGATCTGGTAAGACTACTCTAGCTAAAATGTTGGTCAATTTTT
ATCAACCATATAAGGGGTACATAGATTTTAATGGTCAAAATATTAGTCGCATAGACAAGAAAACTCTTCGTCAACATATT
AACTATCTCCCTCAGCAATCCTATATATTTAGTGGTAGTGTTTTAGAAAATCTTACTTTAGGTGCAGCACGGGGTATTAC
GCAAGCTGATATTTTGAAAGCTTGTGAAATAGCAGAAATTCGTCAAGATATTGAAAACATGCCTATGGGGTTTCAGACAG
AGCTGTCTGATGGAGCAGGTCTGTCTGGAGGGCAAAAGCAACGTATCGCTTTGGCGCGTGCACTACTAACGAAATCTCCT
GTACTAATCTTAGATGAAGCAACTAGCGGATTGGATGTTTTGACAGAAAAGCAGGTTATTGATAACCTCCTAGCACTAAA
AGATAAAACGATCATCTTTGTAGCACACAGGCTTAGTATCGCTGAGCGGACCGACCGTATCGTAGTCATTGATCAGGGAC
GCGTAGTGGAGACAGGTTCTCATCAAGACCTGATGTCTTATCCAGGTTTCTATTATCAATTATTTAGAAAGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

67.927

99.582

0.676

  comA Streptococcus mitis NCTC 12261

66.385

99.163

0.658

  comA Streptococcus pneumoniae Rx1

65.963

99.163

0.654

  comA Streptococcus pneumoniae D39

65.963

99.163

0.654

  comA Streptococcus pneumoniae R6

65.963

99.163

0.654

  comA Streptococcus mitis SK321

65.682

99.163

0.651

  comA Streptococcus pneumoniae TIGR4

65.541

99.163

0.65

  comA Streptococcus gordonii str. Challis substr. CH1

64.286

99.582

0.64


Multiple sequence alignment