Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | VSVS05_RS11765 | Genome accession | NZ_CP016414 |
| Coordinates | 2612905..2613444 (-) | Length | 179 a.a. |
| NCBI ID | WP_065545736.1 | Uniprot ID | A0A1C7FC21 |
| Organism | Vibrio scophthalmi strain VS-05 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2607905..2618444
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VSVS05_RS11745 (VSVS05_02402) | - | 2608300..2608623 (-) | 324 | WP_040757806.1 | hypothetical protein | - |
| VSVS05_RS11750 (VSVS05_02403) | - | 2608631..2609281 (-) | 651 | WP_005593090.1 | type 4a pilus biogenesis protein PilO | - |
| VSVS05_RS11755 (VSVS05_02404) | - | 2609278..2610720 (-) | 1443 | WP_065545734.1 | MSHA biogenesis protein MshI | - |
| VSVS05_RS11760 (VSVS05_02405) | csrD | 2610728..2612734 (-) | 2007 | WP_065545735.1 | RNase E specificity factor CsrD | - |
| VSVS05_RS11765 (VSVS05_02406) | ssb | 2612905..2613444 (-) | 540 | WP_065545736.1 | single-stranded DNA-binding protein | Machinery gene |
| VSVS05_RS11770 (VSVS05_02407) | qstR | 2613743..2614390 (+) | 648 | WP_005593085.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| VSVS05_RS11775 (VSVS05_02408) | galU | 2614509..2615381 (+) | 873 | WP_065429774.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| VSVS05_RS11780 (VSVS05_02409) | uvrA | 2615565..2618387 (+) | 2823 | WP_065545737.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 19973.08 Da Isoelectric Point: 5.6617
>NTDB_id=188160 VSVS05_RS11765 WP_065545736.1 2612905..2613444(-) (ssb) [Vibrio scophthalmi strain VS-05]
MASRGVNKVILVGNLGADPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGVMQMLGGRQGGQGAPMGGQPQQQQQPQQGWGQPQQPAMQQQSHQPQHQQPQ
QQQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGADPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGVMQMLGGRQGGQGAPMGGQPQQQQQPQQGWGQPQQPAMQQQSHQPQHQQPQ
QQQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 540 bp
>NTDB_id=188160 VSVS05_RS11765 WP_065545736.1 2612905..2613444(-) (ssb) [Vibrio scophthalmi strain VS-05]
ATGGCTAGCCGTGGAGTAAACAAAGTAATCTTGGTCGGTAACTTGGGCGCAGATCCTGAAGTCCGTTACATGCCTAGTGG
CGGTGCAGTAGCAAATATTACTGTGGCTACTTCTGAGTCATGGCGTGATAAAGCTACCGGTGAACAGCGTGAAAAAACAG
AGTGGCACCGTGTTGCTCTGTTTGGAAAATTAGCAGAAGTGGCTGGTGAGTACCTACGCAAAGGCTCTCAAGTTTACATT
GAAGGTCAACTGCAAACACGTAAATGGCAAAACCAACAAGGCCAAGATCAGTACACAACGGAAGTTGTGGTACAAGGCTT
TAATGGTGTGATGCAAATGCTAGGCGGTCGTCAAGGCGGTCAAGGTGCACCAATGGGTGGTCAACCTCAACAGCAACAGC
AACCGCAGCAAGGTTGGGGTCAGCCACAACAACCTGCAATGCAGCAGCAATCGCATCAGCCACAACACCAGCAACCTCAG
CAACAACAGCCTCAATATAATGAGCCACCAATGGATTTTGACGACGACATCCCGTTTTAA
ATGGCTAGCCGTGGAGTAAACAAAGTAATCTTGGTCGGTAACTTGGGCGCAGATCCTGAAGTCCGTTACATGCCTAGTGG
CGGTGCAGTAGCAAATATTACTGTGGCTACTTCTGAGTCATGGCGTGATAAAGCTACCGGTGAACAGCGTGAAAAAACAG
AGTGGCACCGTGTTGCTCTGTTTGGAAAATTAGCAGAAGTGGCTGGTGAGTACCTACGCAAAGGCTCTCAAGTTTACATT
GAAGGTCAACTGCAAACACGTAAATGGCAAAACCAACAAGGCCAAGATCAGTACACAACGGAAGTTGTGGTACAAGGCTT
TAATGGTGTGATGCAAATGCTAGGCGGTCGTCAAGGCGGTCAAGGTGCACCAATGGGTGGTCAACCTCAACAGCAACAGC
AACCGCAGCAAGGTTGGGGTCAGCCACAACAACCTGCAATGCAGCAGCAATCGCATCAGCCACAACACCAGCAACCTCAG
CAACAACAGCCTCAATATAATGAGCCACCAATGGATTTTGACGACGACATCCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
77.838 |
100 |
0.804 |
| ssb | Glaesserella parasuis strain SC1401 |
53.846 |
100 |
0.547 |
| ssb | Neisseria gonorrhoeae MS11 |
46.893 |
98.883 |
0.464 |
| ssb | Neisseria meningitidis MC58 |
44.751 |
100 |
0.453 |