Detailed information
Bioinformatically predicted
Overview
| Name | qstR | Type | Regulator |
| Locus tag | VSVS05_RS11770 | Genome accession | NZ_CP016414 |
| Coordinates | 2613743..2614390 (+) | Length | 215 a.a. |
| NCBI ID | WP_005593085.1 | Uniprot ID | A0A1B1NL12 |
| Organism | Vibrio scophthalmi strain VS-05 | ||
| Function | promote expression of competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2608743..2619390
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VSVS05_RS11755 (VSVS05_02404) | - | 2609278..2610720 (-) | 1443 | WP_065545734.1 | MSHA biogenesis protein MshI | - |
| VSVS05_RS11760 (VSVS05_02405) | csrD | 2610728..2612734 (-) | 2007 | WP_065545735.1 | RNase E specificity factor CsrD | - |
| VSVS05_RS11765 (VSVS05_02406) | ssb | 2612905..2613444 (-) | 540 | WP_065545736.1 | single-stranded DNA-binding protein | Machinery gene |
| VSVS05_RS11770 (VSVS05_02407) | qstR | 2613743..2614390 (+) | 648 | WP_005593085.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| VSVS05_RS11775 (VSVS05_02408) | galU | 2614509..2615381 (+) | 873 | WP_065429774.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| VSVS05_RS11780 (VSVS05_02409) | uvrA | 2615565..2618387 (+) | 2823 | WP_065545737.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 215 a.a. Molecular weight: 25017.80 Da Isoelectric Point: 9.2851
>NTDB_id=188161 VSVS05_RS11770 WP_005593085.1 2613743..2614390(+) (qstR) [Vibrio scophthalmi strain VS-05]
MAKNIYTRTIYFLCENKHAHYPIVDRIEATLGLPIPRMEPQDCMLAMQQHKHKILLIDHNNYQTLNSTIRNLPLSNKIFE
TIIFNVERRLTTDELLSFGNLKALFYRNDDLNDVAFGCGEVINSHNWLPRKVAAQLLHYYRHIFDSQTSPATVDLTTREI
QILRSLKTGASNNQIAEDLFISEFTVKSHLYQIFKKLSVKNRVQATSWAKQHLMS
MAKNIYTRTIYFLCENKHAHYPIVDRIEATLGLPIPRMEPQDCMLAMQQHKHKILLIDHNNYQTLNSTIRNLPLSNKIFE
TIIFNVERRLTTDELLSFGNLKALFYRNDDLNDVAFGCGEVINSHNWLPRKVAAQLLHYYRHIFDSQTSPATVDLTTREI
QILRSLKTGASNNQIAEDLFISEFTVKSHLYQIFKKLSVKNRVQATSWAKQHLMS
Nucleotide
Download Length: 648 bp
>NTDB_id=188161 VSVS05_RS11770 WP_005593085.1 2613743..2614390(+) (qstR) [Vibrio scophthalmi strain VS-05]
ATGGCTAAGAACATCTACACTAGAACCATCTATTTCCTATGTGAAAATAAACACGCTCACTATCCAATTGTAGATCGTAT
TGAAGCAACCCTCGGCTTACCGATACCGCGTATGGAACCGCAAGACTGTATGCTCGCCATGCAGCAACACAAACATAAAA
TTCTGCTGATCGACCATAACAACTACCAGACGTTAAATAGCACCATTCGCAACTTGCCGTTATCGAATAAAATATTTGAA
ACGATTATTTTTAATGTCGAGAGACGCCTCACGACTGACGAACTACTCAGCTTTGGTAATTTAAAAGCGCTTTTTTATCG
CAACGATGATCTCAATGACGTTGCATTTGGCTGTGGTGAAGTGATCAATAGCCATAATTGGCTGCCAAGAAAAGTCGCCG
CACAACTATTACATTACTATCGCCATATCTTTGATAGCCAAACCTCACCAGCCACCGTTGACCTAACCACCCGTGAGATC
CAGATTTTACGCAGCTTAAAAACTGGCGCGTCAAATAATCAAATTGCAGAAGACCTCTTTATTAGTGAATTTACCGTCAA
GTCCCACCTATACCAAATATTCAAAAAACTCTCGGTAAAGAACCGCGTGCAGGCAACTTCTTGGGCAAAACAGCACTTAA
TGTCTTAA
ATGGCTAAGAACATCTACACTAGAACCATCTATTTCCTATGTGAAAATAAACACGCTCACTATCCAATTGTAGATCGTAT
TGAAGCAACCCTCGGCTTACCGATACCGCGTATGGAACCGCAAGACTGTATGCTCGCCATGCAGCAACACAAACATAAAA
TTCTGCTGATCGACCATAACAACTACCAGACGTTAAATAGCACCATTCGCAACTTGCCGTTATCGAATAAAATATTTGAA
ACGATTATTTTTAATGTCGAGAGACGCCTCACGACTGACGAACTACTCAGCTTTGGTAATTTAAAAGCGCTTTTTTATCG
CAACGATGATCTCAATGACGTTGCATTTGGCTGTGGTGAAGTGATCAATAGCCATAATTGGCTGCCAAGAAAAGTCGCCG
CACAACTATTACATTACTATCGCCATATCTTTGATAGCCAAACCTCACCAGCCACCGTTGACCTAACCACCCGTGAGATC
CAGATTTTACGCAGCTTAAAAACTGGCGCGTCAAATAATCAAATTGCAGAAGACCTCTTTATTAGTGAATTTACCGTCAA
GTCCCACCTATACCAAATATTCAAAAAACTCTCGGTAAAGAACCGCGTGCAGGCAACTTCTTGGGCAAAACAGCACTTAA
TGTCTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| qstR | Vibrio cholerae strain A1552 |
56.542 |
99.535 |
0.563 |
| qstR | Vibrio campbellii strain DS40M4 |
54.419 |
100 |
0.544 |
| qstR | Vibrio parahaemolyticus RIMD 2210633 |
53.488 |
100 |
0.535 |