Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   VSVS05_RS08795 Genome accession   NZ_CP016414
Coordinates   1972093..1972407 (-) Length   104 a.a.
NCBI ID   WP_005595884.1    Uniprot ID   A0A1B1NMR5
Organism   Vibrio scophthalmi strain VS-05     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1967093..1977407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSVS05_RS08770 (VSVS05_01799) lapB 1967263..1968432 (-) 1170 WP_005595890.1 lipopolysaccharide assembly protein LapB -
  VSVS05_RS08775 (VSVS05_01800) - 1968458..1968736 (-) 279 WP_005595889.1 LapA family protein -
  VSVS05_RS08780 (VSVS05_01801) ihfB 1968870..1969151 (-) 282 WP_005595888.1 integration host factor subunit beta -
  VSVS05_RS08785 (VSVS05_01802) rpsA 1969354..1971024 (-) 1671 WP_005595887.1 30S ribosomal protein S1 -
  VSVS05_RS08790 (VSVS05_01803) cmk 1971133..1971813 (-) 681 WP_005595886.1 (d)CMP kinase -
  VSVS05_RS08795 (VSVS05_01804) comEA 1972093..1972407 (-) 315 WP_005595884.1 ComEA family DNA-binding protein Machinery gene
  VSVS05_RS08800 (VSVS05_01805) ppiD 1972545..1974404 (-) 1860 WP_005595883.1 peptidylprolyl isomerase -
  VSVS05_RS08805 (VSVS05_01806) - 1974576..1974860 (-) 285 Protein_1706 HU family DNA-binding protein -
  VSVS05_RS08810 (VSVS05_01807) lon 1975042..1977393 (-) 2352 WP_005595880.1 endopeptidase La -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11174.85 Da        Isoelectric Point: 4.5557

>NTDB_id=188152 VSVS05_RS08795 WP_005595884.1 1972093..1972407(-) (comEA) [Vibrio scophthalmi strain VS-05]
MNIKALVLSVVLTFSLPFTAVLAEQQPDSPPENPKYDGIEIVVNVNQASAQEIADLLKGIGLTKAQAIVDYRDQQGPFKR
IEDLAKVSGVGEATVAKNVGRIEL

Nucleotide


Download         Length: 315 bp        

>NTDB_id=188152 VSVS05_RS08795 WP_005595884.1 1972093..1972407(-) (comEA) [Vibrio scophthalmi strain VS-05]
ATGAATATCAAAGCGCTTGTTCTTTCTGTTGTACTCACTTTTTCGCTTCCTTTTACTGCCGTCTTGGCAGAACAACAACC
AGATTCTCCACCTGAAAACCCAAAATACGATGGCATTGAAATTGTCGTTAACGTTAATCAAGCATCGGCACAAGAAATAG
CGGATTTGCTCAAGGGCATCGGCTTAACTAAAGCGCAGGCGATTGTCGATTATCGTGACCAACAAGGGCCATTTAAGCGA
ATTGAAGATCTGGCGAAAGTAAGCGGAGTGGGTGAGGCTACTGTGGCCAAAAATGTTGGCCGGATTGAACTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1NMR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

50.962

100

0.51
  comEA Vibrio cholerae strain A1552

50.962

100

0.51
  comEA Vibrio campbellii strain DS40M4

52.577

93.269

0.49
  comEA Vibrio parahaemolyticus RIMD 2210633

50.505

95.192

0.481
  comE1/comEA Haemophilus influenzae Rd KW20

35.455

100

0.375

Multiple sequence alignment