Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BBJ33_RS12085 Genome accession   NZ_CP016395
Coordinates   2540557..2540892 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain M75     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2535557..2545892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBJ33_RS12065 (BBJ33_12065) gcvT 2536168..2537268 (-) 1101 WP_069473502.1 glycine cleavage system aminomethyltransferase GcvT -
  BBJ33_RS12070 (BBJ33_12070) - 2537691..2539361 (+) 1671 WP_003153107.1 SNF2-related protein -
  BBJ33_RS12075 (BBJ33_12075) - 2539379..2540173 (+) 795 WP_069473503.1 YqhG family protein -
  BBJ33_RS12080 (BBJ33_12080) sinI 2540350..2540523 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  BBJ33_RS12085 (BBJ33_12085) sinR 2540557..2540892 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BBJ33_RS12090 (BBJ33_12090) tasA 2540940..2541725 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  BBJ33_RS12095 (BBJ33_12095) sipW 2541789..2542373 (-) 585 WP_003153100.1 signal peptidase I SipW -
  BBJ33_RS12100 (BBJ33_12100) tapA 2542345..2543016 (-) 672 WP_046341384.1 amyloid fiber anchoring/assembly protein TapA -
  BBJ33_RS12105 (BBJ33_12105) - 2543275..2543604 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  BBJ33_RS12110 (BBJ33_12110) - 2543644..2543823 (-) 180 WP_003153093.1 YqzE family protein -
  BBJ33_RS12115 (BBJ33_12115) comGG 2543880..2544257 (-) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  BBJ33_RS12120 (BBJ33_12120) comGF 2544258..2544653 (-) 396 WP_003153090.1 competence type IV pilus minor pilin ComGF -
  BBJ33_RS12125 (BBJ33_12125) comGE 2544667..2544981 (-) 315 WP_046341385.1 competence type IV pilus minor pilin ComGE -
  BBJ33_RS12130 (BBJ33_12130) comGD 2544965..2545402 (-) 438 WP_003153088.1 competence type IV pilus minor pilin ComGD Machinery gene
  BBJ33_RS12135 (BBJ33_12135) comGC 2545392..2545700 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=187913 BBJ33_RS12085 WP_003153104.1 2540557..2540892(+) (sinR) [Bacillus velezensis strain M75]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=187913 BBJ33_RS12085 WP_003153104.1 2540557..2540892(+) (sinR) [Bacillus velezensis strain M75]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment