Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   vm_RS13540 Genome accession   NZ_CP016383
Coordinates   2894810..2895343 (-) Length   177 a.a.
NCBI ID   WP_000168291.1    Uniprot ID   -
Organism   Vibrio mimicus strain SCCF01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2889810..2900343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vm_RS13520 (VM_13525) - 2890265..2890582 (-) 318 WP_070382388.1 MSHA biogenesis protein MshK -
  vm_RS13525 (VM_13530) gspM 2890575..2891225 (-) 651 WP_070382389.1 type II secretion system protein GspM -
  vm_RS13530 (VM_13535) - 2891222..2892661 (-) 1440 WP_070382390.1 MSHA biogenesis protein MshI -
  vm_RS13535 (VM_13540) csrD 2892674..2894686 (-) 2013 WP_070382391.1 RNase E specificity factor CsrD -
  vm_RS13540 (VM_13545) ssb 2894810..2895343 (-) 534 WP_000168291.1 single-stranded DNA-binding protein Machinery gene
  vm_RS13545 (VM_13550) qstR 2895635..2896279 (+) 645 WP_070382392.1 LuxR C-terminal-related transcriptional regulator Regulator
  vm_RS13550 (VM_13555) galU 2896453..2897325 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  vm_RS13555 (VM_13560) uvrA 2897481..2900303 (+) 2823 WP_070382393.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19728.92 Da        Isoelectric Point: 5.7626

>NTDB_id=187702 vm_RS13540 WP_000168291.1 2894810..2895343(-) (ssb) [Vibrio mimicus strain SCCF01]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKTTGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQQGGMNAPQQGGWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=187702 vm_RS13540 WP_000168291.1 2894810..2895343(-) (ssb) [Vibrio mimicus strain SCCF01]
ATGGCAAGCCGTGGCGTAAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACTATCGCGACCTCCGAAACTTGGCGTGACAAAACCACGGGTGAGCAGAAGGAAAAAACCG
AATGGCACCGTGTGACTCTGTATGGAAAGCTGGCAGAAGTTGCTGGTGAGTATCTGCGTAAAGGTTCTCAAGTCTACATT
GAAGGCCAACTGCAAACTCGTAAGTGGCAAGATCAGAATGGTCAAGATCGCTACTCAACTGAAGTGGTTGTACAAGGCTA
CAACGGCATCATGCAGATGCTAGGTGGTCGTGCCCAACAGGGTGGAATGCCAGCTCAGCAAGGCGGCATGAATGCACCAC
AACAAGGTGGTTGGGGACAACCTCAGCAACCAGCGAAACAGCATCAACCGATGCAACAATCGGCACCTCAGCAGTACTCG
CAACCGCAGTACAACGAGCCGCCGATGGATTTTGATGACGACATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

96.629

100

0.972
  ssb Glaesserella parasuis strain SC1401

53.297

100

0.548
  ssb Neisseria gonorrhoeae MS11

46.524

100

0.492
  ssb Neisseria meningitidis MC58

45.745

100

0.486

Multiple sequence alignment