Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   vm_RS13545 Genome accession   NZ_CP016383
Coordinates   2895635..2896279 (+) Length   214 a.a.
NCBI ID   WP_070382392.1    Uniprot ID   -
Organism   Vibrio mimicus strain SCCF01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2890635..2901279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vm_RS13530 (VM_13535) - 2891222..2892661 (-) 1440 WP_070382390.1 MSHA biogenesis protein MshI -
  vm_RS13535 (VM_13540) csrD 2892674..2894686 (-) 2013 WP_070382391.1 RNase E specificity factor CsrD -
  vm_RS13540 (VM_13545) ssb 2894810..2895343 (-) 534 WP_000168291.1 single-stranded DNA-binding protein Machinery gene
  vm_RS13545 (VM_13550) qstR 2895635..2896279 (+) 645 WP_070382392.1 LuxR C-terminal-related transcriptional regulator Regulator
  vm_RS13550 (VM_13555) galU 2896453..2897325 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  vm_RS13555 (VM_13560) uvrA 2897481..2900303 (+) 2823 WP_070382393.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24779.60 Da        Isoelectric Point: 9.6352

>NTDB_id=187703 vm_RS13545 WP_070382392.1 2895635..2896279(+) (qstR) [Vibrio mimicus strain SCCF01]
MQRTNYARTIYLLTTHPKALHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENSQIRQQLGPLKLTSPYFE
TILFNVDKRLKTEDILIFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQTHQTQATVDLTAREI
QILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=187703 vm_RS13545 WP_070382392.1 2895635..2896279(+) (qstR) [Vibrio mimicus strain SCCF01]
ATGCAACGAACCAATTACGCACGCACCATTTACTTGCTGACCACTCACCCCAAAGCTTTACACCCCTCTATCCAGGCGGC
GATCGAGCAACTGAATCTTCCCGTCCCTGTGATTGAGCCGGAGCGTTTACTGCGCGAGTATCAATCCGACAAACACAAAA
TTTTGCTGCTCGATCATGCAGAAAACAGCCAGATCCGCCAGCAACTTGGGCCACTCAAACTCACTAGCCCCTATTTTGAA
ACCATTCTGTTTAATGTGGACAAACGGCTAAAAACTGAAGACATACTCATCTTCGGTAACCTAAAAGGGCTATTTTATGC
CAATGAAGATACTGGTTTTATTGCGCATGGACTCGGAGAGATCATCAATGGCCAGAACTGGTTACCACGCCACGTAAGCA
GCCAGTTATTACACTACTATCGTTACGCTTTCCAAACCCATCAAACTCAGGCTACGGTTGACCTCACCGCACGTGAAATT
CAAATTCTGCGCTGCCTACAGACCGGAGCTTCAAATATGCAAATTGCAGAGAGTTTGTTTATTAGTGAGTTCACGGTGAA
ATCCCATCTCTATCAGATATTTAAAAAGTTGAATGTGAAAAATCGAGTCAAAGCGATTGCCTGGGTAAACCAAAATTTAT
TGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

94.86

100

0.949
  qstR Vibrio parahaemolyticus RIMD 2210633

52.093

100

0.523
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523

Multiple sequence alignment