Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   vm_RS00110 Genome accession   NZ_CP016383
Coordinates   23656..25179 (+) Length   507 a.a.
NCBI ID   WP_070381125.1    Uniprot ID   -
Organism   Vibrio mimicus strain SCCF01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 18656..30179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vm_RS00095 (VM_00095) ilvE 20229..21167 (-) 939 WP_000202000.1 branched-chain-amino-acid transaminase -
  vm_RS00100 (VM_00100) ilvM 21179..21463 (-) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  vm_RS00105 (VM_00105) ilvG 21475..23121 (-) 1647 WP_070381124.1 acetolactate synthase 2 catalytic subunit -
  vm_RS00110 (VM_00110) comM 23656..25179 (+) 1524 WP_070381125.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  vm_RS00115 (VM_00115) - 25270..26154 (+) 885 WP_081337704.1 acyltransferase -
  vm_RS00120 (VM_00120) - 26212..26817 (-) 606 WP_000732288.1 thiol:disulfide interchange protein DsbA/DsbL -
  vm_RS00125 (VM_00125) - 26849..27835 (-) 987 WP_000189610.1 serine/threonine protein kinase -
  vm_RS00130 (VM_00130) ccoG 27883..29307 (-) 1425 WP_070381127.1 cytochrome c oxidase accessory protein CcoG -
  vm_RS00135 (VM_00135) - 29572..29838 (-) 267 WP_000649658.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54959.06 Da        Isoelectric Point: 8.3602

>NTDB_id=187665 vm_RS00110 WP_070381125.1 23656..25179(+) (comM) [Vibrio mimicus strain SCCF01]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTKLESYEFIGELALSGEIRGVKGVLPAALAANQVNRCLVVPHSNGDQAALVGSERHKSAQSL
LEVCADLCGQQNLSLFQSAPSVLEIPTTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASIASLTQQEINQHNWKLRPFRSPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPNGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGDR
GESTAAVRQRVLAARERMLVRSGKVNALLQSREIEQYCPLVKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEAQ
IARPHLAEALGYRAMDRLLKQLSAQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=187665 vm_RS00110 WP_070381125.1 23656..25179(+) (comM) [Vibrio mimicus strain SCCF01]
ATGGGACTTGCGATCATTCACAGCCGCGCCAGTATTGGTGTACAGGCACCACCTGTCACGGTTGAGGTTCATATCAGTAA
TGGAATGCCGGGTTTCACCTTGGTTGGTCTGCCGGAAACTACAGTAAAAGAGTCGCGGGATCGAGTGCGTAGCGCGATCA
TTAACTCTCGATTTGAGTTTCCGGCGAAACGCATTACGGTCAATTTAGCACCGGCTGATCTGCCCAAAGAGGGGGGACGT
TTCGATCTTCCAATTGCACTCGGAATTTTGGCCGCCTCGGATCAAATTGCGCGAACTAAGCTTGAAAGTTACGAATTTAT
CGGTGAACTGGCGCTATCGGGTGAGATTCGTGGTGTGAAAGGGGTATTGCCTGCCGCCCTCGCCGCTAATCAAGTTAATC
GCTGTTTAGTGGTGCCACACAGTAATGGTGATCAGGCGGCGTTAGTTGGGAGTGAACGGCATAAATCTGCGCAAAGCTTA
TTAGAAGTGTGTGCCGATCTGTGTGGACAGCAGAACCTGTCGTTATTTCAAAGTGCACCAAGTGTGTTGGAGATACCAAC
TACCCGCGATTTACAGGATATTATTGGTCAGCAACAGGGTAAGCGTGCGTTGGAAATTGCAGCGGCAGGAAACCATAACC
TGCTGTTTTTAGGTCCTCCGGGTACGGGTAAAACCATGCTTGCTTCGCGCCTGTGCGATTTATTGCCGGAAATGAGTGAC
GAAGAGGCGATGGAAACGGCATCGATCGCGTCCCTCACGCAGCAAGAAATTAACCAACATAACTGGAAATTGCGCCCTTT
TCGTTCGCCACACCATTCAAGCTCAATGGCGGCTTTAGTGGGGGGCGGCACCATTCCGCGTCCCGGTGAAATTTCTCTCG
CCCATAATGGTTTGCTGTTTTTGGACGAAATGCCGGAGTTTGAGCGCAAAGTGTTGGATTCTCTGCGTGAACCGCTGGAA
TCGGGGGAAATTGTGATTTCTCGTGCGCAAGGTAAAACCCGTTTTCCGGCGCGCTTTCAATTGGTCGGCGCGTTAAATCC
AAGCCCAAACGGCTATTACGAGGGCAGTCAGGCGCGTGCTAATCCGCAGAGTATTCTGCGCTATTTGAGTCGGCTCTCTG
GCCCTTTGTTGGATCGCTTTGATATGTCGATTGAGATCCCAGCCTTACCGAAGGGTACCTTGGCCAATGGTGGTGATCGT
GGTGAATCCACCGCGGCTGTGCGTCAGCGAGTGTTGGCTGCTCGGGAGCGAATGCTTGTACGTTCTGGTAAGGTGAATGC
CTTGCTGCAAAGCCGAGAAATTGAACAATATTGTCCTTTGGTCAAAGCCGATGCCGAGTTTTTGGAAAGTGCGCTCCATC
GCTTGGGTTTATCGATTCGTGCTTACCACCGCATCATCAAAGTCGCGCGAACCATTGCTGATTTACAAGGTGAAGCGCAG
ATTGCTCGCCCACATCTGGCGGAGGCGTTAGGTTATCGAGCGATGGATAGGCTACTCAAGCAACTGAGTGCGCAGAATGT
CTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

96.844

100

0.968
  comM Vibrio campbellii strain DS40M4

84.646

100

0.848
  comM Haemophilus influenzae Rd KW20

66.864

100

0.669
  comM Glaesserella parasuis strain SC1401

64.51

100

0.649
  comM Legionella pneumophila str. Paris

51.008

97.83

0.499
  comM Legionella pneumophila strain ERS1305867

51.008

97.83

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.701

100

0.438

Multiple sequence alignment