Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BBH56_RS00345 Genome accession   NZ_CP016382
Coordinates   64989..66482 (-) Length   497 a.a.
NCBI ID   WP_148121562.1    Uniprot ID   -
Organism   Spiribacter roseus strain SSL50     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 59989..71482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBH56_RS00330 (BBH56_00330) - 61181..61690 (+) 510 WP_148121559.1 cytochrome c5 family protein -
  BBH56_RS00335 (BBH56_00335) - 61691..63676 (-) 1986 WP_148121560.1 monovalent cation:proton antiporter family protein -
  BBH56_RS00340 (BBH56_00340) - 63697..64959 (-) 1263 WP_148121561.1 D-amino acid dehydrogenase -
  BBH56_RS00345 (BBH56_00345) comM 64989..66482 (-) 1494 WP_148121562.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BBH56_RS00350 (BBH56_00350) - 66536..66817 (-) 282 WP_148121563.1 ubiquinone biosynthesis accessory factor UbiK -
  BBH56_RS00355 (BBH56_00355) glnK 67068..67406 (+) 339 WP_069133919.1 P-II family nitrogen regulator -
  BBH56_RS00360 (BBH56_00360) - 67429..68676 (+) 1248 WP_144347052.1 ammonium transporter -
  BBH56_RS00365 (BBH56_00365) - 68802..69686 (+) 885 WP_148121564.1 NAD(P)-dependent oxidoreductase -
  BBH56_RS00370 (BBH56_00370) - 69697..70323 (-) 627 WP_148121565.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53032.53 Da        Isoelectric Point: 8.9021

>NTDB_id=187653 BBH56_RS00345 WP_148121562.1 64989..66482(-) (comM) [Spiribacter roseus strain SSL50]
MALAQIQARAAVGIDAPRVGVEVHLGGGLPSLSIVGLPNTAVREARDRVRGALTTSGFEFPRRRITVNLAPADLPKDGAR
FDLAIALGILVASGQIPGQHCGTTVFCAELALSGRLRPVNGTLPVALRCTAASETLVVAADNAAEAALAGGPVHGADHLL
DVTRHLGGKRPLPPAQPSGRGHAPAGPDLRDVIAQAPARRALEIAAAGGHSLLFCGPPGSGKSLMAARLPGLLPAMTDAE
AMESASLHSIAEGCFDPAHWARRPFRSPHHSTSSRALTGGGMRPRPGEISLAHHGVLFLDELPEFPREALEALREPLETG
EISVSRVNARLRFPARFQLIAAMNPCPCGYEGDSDHDCRCTPAQIRRYGNRISGPLLDRIDLQVRVPRLTAAQLDTCTEG
ESSDAVARRVQIARERQLDRDGIPASHLSVSAMRRVGQLDAAGRQIMRQATQRFGLSARGWHRCWRIARSIADLDGAADI
REHHIAEALSYRERVQR

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=187653 BBH56_RS00345 WP_148121562.1 64989..66482(-) (comM) [Spiribacter roseus strain SSL50]
ATGGCACTGGCACAGATTCAGGCCCGCGCGGCGGTGGGCATCGACGCCCCGCGCGTGGGCGTCGAGGTTCATCTGGGCGG
CGGTCTGCCGTCGCTGTCCATCGTGGGATTGCCCAATACGGCGGTGCGCGAGGCCCGCGACCGGGTCCGCGGGGCACTGA
CCACCAGCGGTTTTGAATTCCCGCGTCGCCGCATCACCGTCAATCTCGCCCCCGCCGATCTGCCCAAGGATGGCGCCCGC
TTCGACCTGGCGATTGCGCTGGGCATCCTCGTGGCCTCCGGCCAGATTCCCGGACAGCATTGCGGGACCACCGTGTTCTG
CGCCGAGCTGGCGCTGTCCGGCCGCCTGCGTCCGGTCAACGGCACCCTGCCCGTGGCACTGCGCTGTACCGCCGCCTCGG
AAACCCTCGTCGTTGCCGCCGACAATGCCGCCGAGGCCGCGCTGGCGGGTGGCCCCGTGCATGGCGCCGATCATCTGCTC
GATGTGACCCGGCATCTCGGCGGCAAGCGTCCCCTGCCACCGGCGCAGCCCAGCGGGCGCGGCCATGCCCCGGCAGGCCC
CGATCTGCGCGATGTCATCGCCCAGGCGCCGGCGCGGCGGGCCCTTGAAATCGCCGCGGCCGGCGGCCATAGCCTGCTGT
TCTGCGGCCCGCCCGGCAGTGGCAAAAGCCTGATGGCGGCGCGCCTGCCAGGCCTGCTGCCCGCCATGACCGATGCCGAG
GCAATGGAGTCGGCATCGCTGCACTCCATCGCCGAGGGTTGCTTTGACCCCGCTCACTGGGCCCGACGCCCCTTCCGCAG
CCCCCATCACAGCACATCGTCGCGGGCACTGACCGGCGGTGGCATGCGCCCGCGGCCCGGCGAGATCTCGCTCGCCCACC
ACGGGGTGCTGTTCCTCGACGAGCTGCCCGAATTCCCCCGTGAAGCCCTCGAGGCCCTGCGCGAGCCACTCGAGACCGGC
GAAATCAGCGTCTCGCGGGTCAACGCGCGGCTGCGCTTTCCCGCCCGCTTCCAGCTGATTGCGGCCATGAACCCCTGCCC
CTGCGGCTACGAGGGTGACAGCGACCATGACTGCCGCTGCACGCCGGCGCAGATCCGTCGCTACGGCAACCGCATCAGCG
GTCCGTTGCTGGATCGCATCGATCTGCAGGTGCGGGTCCCCCGGCTGACCGCCGCCCAGCTCGACACCTGCACTGAGGGC
GAGTCCAGCGACGCGGTGGCCCGCCGCGTCCAGATCGCCCGCGAGCGCCAGCTGGACCGTGACGGGATCCCGGCCAGTCA
TCTGTCGGTGAGCGCGATGCGCCGCGTCGGCCAACTCGATGCCGCCGGCCGGCAAATCATGCGCCAGGCCACCCAACGCT
TTGGTCTGTCGGCACGCGGCTGGCACCGCTGCTGGCGGATCGCGCGCAGCATCGCCGATCTCGACGGCGCTGCCGACATA
CGGGAACACCACATCGCCGAAGCACTGTCCTATCGTGAGCGGGTTCAGCGTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.111

99.598

0.509
  comM Haemophilus influenzae Rd KW20

49.503

100

0.501
  comM Vibrio campbellii strain DS40M4

50

99.799

0.499
  comM Glaesserella parasuis strain SC1401

49

100

0.493
  comM Legionella pneumophila str. Paris

45.972

100

0.471
  comM Legionella pneumophila strain ERS1305867

45.972

100

0.471
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

39.921

100

0.406

Multiple sequence alignment