Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BBF96_RS13350 Genome accession   NZ_CP016379
Coordinates   2947525..2947920 (-) Length   131 a.a.
NCBI ID   WP_127017628.1    Uniprot ID   A0A3S9T1H9
Organism   Anoxybacter fermentans strain DY22613     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2942525..2952920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBF96_RS13325 (BBF96_13165) lonC 2943394..2945343 (-) 1950 WP_127017623.1 Lon family ATP-dependent protease -
  BBF96_RS13330 (BBF96_13170) rplI 2945366..2945809 (-) 444 WP_127017624.1 50S ribosomal protein L9 -
  BBF96_RS13335 (BBF96_13175) - 2945894..2946793 (-) 900 WP_127017625.1 DUF2232 domain-containing protein -
  BBF96_RS13340 (BBF96_13180) - 2946813..2947142 (-) 330 WP_127017626.1 MazG-like family protein -
  BBF96_RS13345 (BBF96_13185) rpsR 2947279..2947509 (-) 231 WP_127017627.1 30S ribosomal protein S18 -
  BBF96_RS13350 (BBF96_13190) ssbA 2947525..2947920 (-) 396 WP_127017628.1 single-stranded DNA-binding protein Machinery gene
  BBF96_RS13355 (BBF96_13195) rpsF 2947957..2948244 (-) 288 WP_127017629.1 30S ribosomal protein S6 -
  BBF96_RS13360 (BBF96_13200) - 2948644..2949405 (-) 762 WP_164731072.1 ABC transporter permease -
  BBF96_RS13365 (BBF96_13205) - 2949392..2950348 (-) 957 WP_127017631.1 ABC transporter ATP-binding protein -
  BBF96_RS17170 - 2950524..2950658 (+) 135 WP_257791992.1 hypothetical protein -
  BBF96_RS17530 - 2951068..2951202 (+) 135 WP_418655024.1 transposase -
  BBF96_RS13380 (BBF96_13215) ychF 2951300..2952391 (-) 1092 WP_127017633.1 redox-regulated ATPase YchF -
  BBF96_RS13385 (BBF96_13220) - 2952405..2952599 (-) 195 WP_236777824.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14854.59 Da        Isoelectric Point: 4.6326

>NTDB_id=187616 BBF96_RS13350 WP_127017628.1 2947525..2947920(-) (ssbA) [Anoxybacter fermentans strain DY22613]
MLNRVILIGRLTRDPELRYTTSGIAVATFALAVERPFTNQSGERDVDFIDIVIWRKLAETCANHLGKGRLVAVEGRLQTR
SYDDSNGIRRKAVEVVADSVRFLDWPKNTSSSNDYDDQEFNGFDDDIDVPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=187616 BBF96_RS13350 WP_127017628.1 2947525..2947920(-) (ssbA) [Anoxybacter fermentans strain DY22613]
ATGTTAAATCGGGTTATTTTAATTGGGCGTCTGACAAGGGATCCTGAACTCCGCTATACTACCAGCGGTATTGCAGTAGC
TACTTTTGCCCTTGCAGTGGAGCGTCCTTTTACTAATCAAAGTGGTGAACGTGATGTTGATTTTATTGATATTGTTATTT
GGCGTAAGTTGGCTGAAACATGTGCCAACCATTTAGGTAAAGGACGCTTAGTTGCAGTAGAAGGACGTTTGCAAACTCGC
TCCTATGACGACAGCAACGGTATTCGGCGTAAAGCGGTAGAGGTTGTTGCTGATAGTGTACGTTTTTTAGATTGGCCTAA
GAATACATCTTCTTCAAATGACTATGATGATCAGGAATTTAATGGTTTTGATGATGATATCGATGTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S9T1H9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.889

82.443

0.527
  ssb Latilactobacillus sakei subsp. sakei 23K

53.279

93.13

0.496
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.877

87.023

0.443
  ssb Neisseria gonorrhoeae MS11

41.525

90.076

0.374
  ssb Neisseria meningitidis MC58

40.678

90.076

0.366

Multiple sequence alignment