Detailed information
Bioinformatically predicted
Overview
| Name | comA/nlmT | Type | Regulator |
| Locus tag | BBD32_RS12550 | Genome accession | NZ_CP016374 |
| Coordinates | 2729139..2729297 (-) | Length | 52 a.a. |
| NCBI ID | WP_078396934.1 | Uniprot ID | - |
| Organism | Elizabethkingia anophelis strain F3201 | ||
| Function | transport of ComC (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2724139..2734297
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BBD32_RS12535 (BBD32_12445) | - | 2726118..2727560 (+) | 1443 | WP_078396280.1 | SusD/RagB family nutrient-binding outer membrane lipoprotein | - |
| BBD32_RS19960 | - | 2727713..2728156 (-) | 444 | WP_221406844.1 | integrase core domain-containing protein | - |
| BBD32_RS19965 | - | 2728137..2728466 (-) | 330 | WP_221406843.1 | hypothetical protein | - |
| BBD32_RS19970 (BBD32_12455) | - | 2728586..2729017 (-) | 432 | WP_078396281.1 | transposase | - |
| BBD32_RS12550 | comA/nlmT | 2729139..2729297 (-) | 159 | WP_078396934.1 | ATP-binding cassette domain-containing protein | Regulator |
| BBD32_RS12555 (BBD32_12460) | - | 2729792..2730376 (-) | 585 | WP_311317358.1 | Crp/Fnr family transcriptional regulator | - |
| BBD32_RS12560 (BBD32_12465) | - | 2730737..2731981 (-) | 1245 | WP_078396283.1 | DcaP family trimeric outer membrane transporter | - |
| BBD32_RS20240 | - | 2732220..2732585 (-) | 366 | WP_078396284.1 | isochorismatase family protein | - |
| BBD32_RS12570 (BBD32_12475) | - | 2732534..2732719 (-) | 186 | WP_078396285.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 52 a.a. Molecular weight: 5616.42 Da Isoelectric Point: 8.4937
>NTDB_id=187556 BBD32_RS12550 WP_078396934.1 2729139..2729297(-) (comA/nlmT) [Elizabethkingia anophelis strain F3201]
MEKGKTTTIVGESGSGKTTLVSLLQNLYPLKGDNDINYISNYSLRSLISVVP
MEKGKTTTIVGESGSGKTTLVSLLQNLYPLKGDNDINYISNYSLRSLISVVP
Nucleotide
Download Length: 159 bp
>NTDB_id=187556 BBD32_RS12550 WP_078396934.1 2729139..2729297(-) (comA/nlmT) [Elizabethkingia anophelis strain F3201]
ATAGAAAAAGGAAAAACTACCACTATTGTAGGAGAAAGCGGAAGTGGGAAAACAACACTAGTTTCATTACTACAAAATCT
ATATCCTCTAAAAGGAGACAATGATATTAATTACATCTCCAATTACTCTTTGAGAAGCTTAATATCAGTAGTTCCCTAG
ATAGAAAAAGGAAAAACTACCACTATTGTAGGAGAAAGCGGAAGTGGGAAAACAACACTAGTTTCATTACTACAAAATCT
ATATCCTCTAAAAGGAGACAATGATATTAATTACATCTCCAATTACTCTTTGAGAAGCTTAATATCAGTAGTTCCCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comA/nlmT | Streptococcus mutans UA159 |
44.828 |
100 |
0.5 |
| comA | Streptococcus gordonii str. Challis substr. CH1 |
38.182 |
100 |
0.404 |
| comA | Streptococcus pneumoniae Rx1 |
37.5 |
100 |
0.404 |
| comA | Streptococcus pneumoniae D39 |
37.5 |
100 |
0.404 |
| comA | Streptococcus pneumoniae R6 |
37.5 |
100 |
0.404 |
| comA | Streptococcus mitis SK321 |
37.5 |
100 |
0.404 |
| comA | Streptococcus mitis NCTC 12261 |
37.5 |
100 |
0.404 |
| comA | Streptococcus pneumoniae TIGR4 |
37.736 |
100 |
0.385 |