Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A9X72_RS06390 Genome accession   NZ_CP020520
Coordinates   1218025..1218762 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 190     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1213025..1223762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9X72_RS06355 (A9X72_06355) yfiL 1213183..1213548 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  A9X72_RS06360 (A9X72_06360) aroF 1213758..1214828 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  A9X72_RS06365 (A9X72_06365) tyrA 1214839..1215960 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  A9X72_RS06370 (A9X72_06370) pheA 1216003..1217163 (-) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  A9X72_RS06375 pheL 1217262..1217309 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  A9X72_RS06380 (A9X72_06375) raiA 1217413..1217754 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  A9X72_RS06390 (A9X72_06385) comL 1218025..1218762 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  A9X72_RS06395 (A9X72_06390) rluD 1218897..1219877 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A9X72_RS06400 (A9X72_06395) yfiH 1219874..1220605 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  A9X72_RS06405 (A9X72_06400) clpC 1220735..1223308 (+) 2574 WP_069354125.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=187337 A9X72_RS06390 WP_000197686.1 1218025..1218762(-) (comL) [Escherichia coli strain 190]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=187337 A9X72_RS06390 WP_000197686.1 1218025..1218762(-) (comL) [Escherichia coli strain 190]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment