Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BA894_RS13700 Genome accession   NZ_CP016351
Coordinates   3020416..3020964 (-) Length   182 a.a.
NCBI ID   WP_065297435.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16374     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3015416..3025964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA894_RS13680 (BA894_13680) - 3015740..3016072 (-) 333 WP_065297432.1 MSHA biogenesis protein MshK -
  BA894_RS13685 (BA894_13685) gspM 3016065..3016715 (-) 651 WP_065297433.1 type II secretion system protein GspM -
  BA894_RS13690 (BA894_13690) - 3016712..3018157 (-) 1446 WP_014233115.1 hypothetical protein -
  BA894_RS13695 (BA894_13695) csrD 3018169..3020178 (-) 2010 WP_065297434.1 RNase E specificity factor CsrD -
  BA894_RS13700 (BA894_13700) ssb 3020416..3020964 (-) 549 WP_065297435.1 single-stranded DNA-binding protein Machinery gene
  BA894_RS13705 (BA894_13705) qstR 3021242..3021886 (+) 645 WP_065297436.1 LuxR C-terminal-related transcriptional regulator Regulator
  BA894_RS13710 (BA894_13710) galU 3022066..3022938 (+) 873 WP_014233119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  BA894_RS13715 (BA894_13715) uvrA 3023087..3025909 (+) 2823 WP_065297437.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20039.21 Da        Isoelectric Point: 5.2257

>NTDB_id=187267 BA894_RS13700 WP_065297435.1 3020416..3020964(-) (ssb) [Vibrio natriegens strain CCUG 16374]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQAPQQGGWGQPQQPAQPQYNAPQQQAPKQSAPQ
QPQQPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=187267 BA894_RS13700 WP_065297435.1 3020416..3020964(-) (ssb) [Vibrio natriegens strain CCUG 16374]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAACCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCAACCTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACTG
AGTGGCACCGAGTTGTGCTGTTTGGCAAACTTGCGGAAGTTGCTGGCGAATACCTACGTAAAGGCTCACAAGTTTATGTT
GAAGGACAACTTCAAACGCGTAAATGGCAAGATCAGAGTGGTCAAGACCGTTACTCAACTGAAGTTGTGGTTCAGGGCTT
CAATGGCGTAATGCAAATGCTGGGTGGTCGCGCTCAAGGTGGCGCTCCTGCTATGGGTGGCCAGGCACCTCAGCAAGGTG
GTTGGGGTCAGCCTCAGCAACCAGCTCAGCCGCAATACAATGCGCCTCAGCAACAGGCTCCAAAGCAATCTGCTCCTCAG
CAGCCTCAGCAGCCTCAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80

100

0.813
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.593
  ssb Neisseria meningitidis MC58

46.111

98.901

0.456
  ssb Neisseria gonorrhoeae MS11

46.111

98.901

0.456

Multiple sequence alignment