Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   BA894_RS13705 Genome accession   NZ_CP016351
Coordinates   3021242..3021886 (+) Length   214 a.a.
NCBI ID   WP_065297436.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16374     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3016242..3026886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA894_RS13690 (BA894_13690) - 3016712..3018157 (-) 1446 WP_014233115.1 hypothetical protein -
  BA894_RS13695 (BA894_13695) csrD 3018169..3020178 (-) 2010 WP_065297434.1 RNase E specificity factor CsrD -
  BA894_RS13700 (BA894_13700) ssb 3020416..3020964 (-) 549 WP_065297435.1 single-stranded DNA-binding protein Machinery gene
  BA894_RS13705 (BA894_13705) qstR 3021242..3021886 (+) 645 WP_065297436.1 LuxR C-terminal-related transcriptional regulator Regulator
  BA894_RS13710 (BA894_13710) galU 3022066..3022938 (+) 873 WP_014233119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  BA894_RS13715 (BA894_13715) uvrA 3023087..3025909 (+) 2823 WP_065297437.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24503.52 Da        Isoelectric Point: 9.9361

>NTDB_id=187268 BA894_RS13705 WP_065297436.1 3021242..3021886(+) (qstR) [Vibrio natriegens strain CCUG 16374]
MKKSAYARKLFLISMEENAPQKVAALEKYIEIGIPVISTDALMEAKPKHRNKILLIDFSEHKSLIQSIKNLPLVWKNYET
VIFNVPKRLTTDELLSFGQLKGVFYAEESLERIGEGLKGIINGQNWLPRNVSSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQNGASNSRMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=187268 BA894_RS13705 WP_065297436.1 3021242..3021886(+) (qstR) [Vibrio natriegens strain CCUG 16374]
ATGAAAAAGTCAGCTTACGCCAGAAAGCTATTTCTGATCAGTATGGAAGAGAATGCGCCCCAAAAGGTAGCGGCACTGGA
GAAGTACATCGAGATCGGTATCCCAGTGATCTCGACGGATGCTTTAATGGAAGCGAAGCCGAAACATCGTAATAAAATCT
TACTCATCGATTTCAGTGAACATAAGTCGCTTATTCAGTCGATTAAGAATTTACCTCTGGTGTGGAAAAACTATGAAACA
GTAATTTTTAATGTTCCTAAACGTCTGACGACGGATGAGCTGCTCTCTTTCGGCCAGCTTAAAGGCGTATTCTATGCTGA
AGAATCGCTTGAACGAATTGGGGAAGGATTAAAAGGCATCATTAATGGCCAAAACTGGTTACCTCGCAATGTGTCCAGCC
AGCTGCTTCACTACTACCGCAATGTGATCAATACCCATACCGCACCCGCGACCGTGGATCTTACCATTCGGGAATTACAA
GTGTTGCGCTGCCTTCAAAATGGGGCATCCAATAGCCGAATGGCAGAAGAGTTATTTGTGAGCGAGTTTACGATTAAGTC
TCACCTGTACCAGATTTTTAAAAAGCTCTCGGTGAAAAACCGCGTACAAGCGATTGCTTGGGCTGATCAGAATCTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

89.72

100

0.897
  qstR Vibrio campbellii strain DS40M4

87.85

100

0.879
  qstR Vibrio cholerae strain A1552

53.953

100

0.542

Multiple sequence alignment