Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BA893_RS15915 Genome accession   NZ_CP016349
Coordinates   3466072..3467595 (-) Length   507 a.a.
NCBI ID   WP_065300403.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16373     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3461072..3472595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA893_RS15895 (BA893_15895) - 3462301..3463287 (+) 987 WP_065300484.1 serine/threonine protein kinase -
  BA893_RS15900 (BA893_15900) - 3463321..3463923 (+) 603 WP_065300400.1 thiol:disulfide interchange protein DsbA/DsbL -
  BA893_RS15905 (BA893_15905) - 3463967..3464845 (-) 879 WP_065300401.1 acyltransferase -
  BA893_RS15910 (BA893_15910) - 3465084..3466040 (+) 957 WP_065300402.1 DUF2860 domain-containing protein -
  BA893_RS15915 (BA893_15915) comM 3466072..3467595 (-) 1524 WP_065300403.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BA893_RS15920 (BA893_15920) ilvG 3468063..3469709 (+) 1647 WP_065300404.1 acetolactate synthase 2 catalytic subunit -
  BA893_RS15925 (BA893_15925) ilvM 3469721..3470005 (+) 285 WP_014233403.1 acetolactate synthase 2 small subunit -
  BA893_RS15930 (BA893_15930) ilvD 3470173..3472014 (+) 1842 WP_020333559.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55103.09 Da        Isoelectric Point: 8.2033

>NTDB_id=187232 BA893_RS15915 WP_065300403.1 3466072..3467595(-) (comM) [Vibrio natriegens strain CCUG 16373]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALAASKFERHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLHKSPKRKTTESHNRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKIRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTVVVKERVNDARQQMLSRSGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGEEQ
IERAHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=187232 BA893_RS15915 WP_065300403.1 3466072..3467595(-) (comM) [Vibrio natriegens strain CCUG 16373]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGCGTCGGTGTACAAGCGCCGTCAGTTAGTGTGGAAGTACATATTAGTAA
CGGTATGCCGGGCTTTACTCTGGTCGGGCTGCCAGAAACCACGGTAAAAGAATCAAAGGATCGTGTACGTAGTGCCATTA
TCAATTCCAATTTTCAATTTCCTGCCAAACGCATCACGGTCAACTTAGCTCCGGCGGATTTACCCAAAGAGGGCGGACGC
TTTGACTTACCCATTGCGCTGGGTATTTTGGCCGCTTCAGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAGTTGGCATTGTCTGGAGGCTTAAGGCCAGTAAAAGGGGTGCTACCTGCCGCACTCGCTGCAAGCAAGTTTGAGC
GCCATTTGGTCGTGCCACATGTGAATGGTGATCAGGCAGCGCTGGTGGGTAAAGAACAGCATAAATCCGCTCAGTCGTTA
CTTGAGGTGTGTGCTGAATTGTGTGGTCAACATCGGCTTAATCTGCATAAATCACCTAAGCGTAAAACAACAGAAAGCCA
TAACCGAGATTTACAGGACATCATTGGCCAGCAACAGGGTAAGCGAGCGCTTGAGATTGCTGCAGCAGGAAACCATAACT
TACTTTTCCTTGGACCGCCGGGAACAGGAAAAACCATGTTAGCGTCGCGCTTATGCGATTTGTTACCTGAAATGAGTGAT
GAGGAAGCGATGGAAACCGCATCCGTCGCGTCATTAACACAAAGTGAAATCAATGAGCATAACTGGAAGATACGGCCGTT
TCGTTCTCCACACCACTCCAGTTCGATGGCGGCTTTAGTCGGCGGAGGTTCGGTTCCGAGGCCGGGAGAAATTTCTCTGG
CTCACAATGGCTTGTTGTTTCTGGATGAAATGCCGGAGTTCGATCGTAAGGTGCTGGATTCGCTGCGAGAACCGCTGGAG
TCGGGCGAAATCATCATCTCTCGGGCTCAGGGAAAAACTCGATTTCCTGCCCGCTTTCAGCTGGTGGGCGCTCTTAACCC
CAGTCCGACTGGCTACTACGAAGGCAACCAGGCTCGTACCAATCCACAAGCCATTCTGCGTTATTTAGGTCGTCTGTCGG
GACCGCTACTAGATCGATTCGATATGTCTCTGGAAATTCCTGCTTTGCCAAAGGGCACATTATCTGAGGGCGGTGATAGA
GGTGAGCCAACAGTGGTTGTGAAAGAGCGCGTTAATGACGCACGTCAGCAGATGTTAAGTCGCAGCGGTAAGGTGAACGC
TTTGCTGGGTAGTCGTGAGATAGAAGCGTTTTGCCCATTACAAAAAAGTGATGCTGAGTTTCTGGAGACAGCTTTACACA
GACTGGGACTGTCTATTCGTGCGTATCACCGAATCATTAAAGTTGCCCGCACTATTGCTGATCTGGATGGGGAAGAGCAG
ATTGAGCGCGCCCATCTGGCAGAAGCCCTTGGATATCGAGCAATGGACCGATTACTGAAACAGCTTACTGCTCAGGCTGT
GTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.083

100

0.941
  comM Vibrio cholerae strain A1552

85.207

100

0.852
  comM Haemophilus influenzae Rd KW20

65.483

100

0.655
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

49.395

97.83

0.483
  comM Legionella pneumophila strain ERS1305867

49.395

97.83

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.401

100

0.446

Multiple sequence alignment