Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BA893_RS14120 Genome accession   NZ_CP016349
Coordinates   3093529..3094068 (-) Length   179 a.a.
NCBI ID   WP_014233117.1    Uniprot ID   A0AAN1CWJ2
Organism   Vibrio natriegens strain CCUG 16373     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3088529..3099068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA893_RS14100 (BA893_14100) - 3088853..3089185 (-) 333 WP_065300269.1 MSHA biogenesis protein MshK -
  BA893_RS14105 (BA893_14105) gspM 3089178..3089828 (-) 651 WP_065300270.1 type II secretion system protein GspM -
  BA893_RS14110 (BA893_14110) - 3089825..3091270 (-) 1446 WP_065300271.1 MSHA biogenesis protein MshI -
  BA893_RS14115 (BA893_14115) csrD 3091282..3093291 (-) 2010 WP_065297434.1 RNase E specificity factor CsrD -
  BA893_RS14120 (BA893_14120) ssb 3093529..3094068 (-) 540 WP_014233117.1 single-stranded DNA-binding protein Machinery gene
  BA893_RS14125 (BA893_14125) qstR 3094346..3094990 (+) 645 WP_014233118.1 LuxR C-terminal-related transcriptional regulator Regulator
  BA893_RS14130 (BA893_14130) galU 3095170..3096042 (+) 873 WP_014233119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  BA893_RS14135 (BA893_14135) uvrA 3096191..3099013 (+) 2823 WP_065300272.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19685.83 Da        Isoelectric Point: 5.2257

>NTDB_id=187222 BA893_RS14120 WP_014233117.1 3093529..3094068(-) (ssb) [Vibrio natriegens strain CCUG 16373]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQAPQQGGWGQPQQPAQPQYNAPQQQAPKQSAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=187222 BA893_RS14120 WP_014233117.1 3093529..3094068(-) (ssb) [Vibrio natriegens strain CCUG 16373]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAACCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCAACCTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACTG
AGTGGCACCGAGTTGTGCTGTTTGGCAAACTTGCGGAAGTTGCTGGCGAATACCTACGTAAAGGCTCACAAGTTTACGTT
GAAGGACAACTTCAAACTCGTAAATGGCAAGATCAGAGTGGTCAAGACCGTTACTCAACTGAAGTTGTGGTTCAGGGCTT
CAATGGCGTAATGCAAATGCTGGGTGGTCGCGCTCAAGGTGGCGCTCCTGCTATGGGTGGCCAGGCTCCTCAGCAAGGTG
GTTGGGGTCAGCCTCAGCAACCAGCTCAGCCGCAATACAATGCGCCTCAGCAACAGGCTCCAAAGCAATCTGCTCCACAG
CAGCCTCAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.821
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.598
  ssb Neisseria meningitidis MC58

46.667

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.469

Multiple sequence alignment