Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   BA893_RS14125 Genome accession   NZ_CP016349
Coordinates   3094346..3094990 (+) Length   214 a.a.
NCBI ID   WP_014233118.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16373     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3089346..3099990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA893_RS14110 (BA893_14110) - 3089825..3091270 (-) 1446 WP_065300271.1 MSHA biogenesis protein MshI -
  BA893_RS14115 (BA893_14115) csrD 3091282..3093291 (-) 2010 WP_065297434.1 RNase E specificity factor CsrD -
  BA893_RS14120 (BA893_14120) ssb 3093529..3094068 (-) 540 WP_014233117.1 single-stranded DNA-binding protein Machinery gene
  BA893_RS14125 (BA893_14125) qstR 3094346..3094990 (+) 645 WP_014233118.1 LuxR C-terminal-related transcriptional regulator Regulator
  BA893_RS14130 (BA893_14130) galU 3095170..3096042 (+) 873 WP_014233119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  BA893_RS14135 (BA893_14135) uvrA 3096191..3099013 (+) 2823 WP_065300272.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24459.46 Da        Isoelectric Point: 9.9863

>NTDB_id=187223 BA893_RS14125 WP_014233118.1 3094346..3094990(+) (qstR) [Vibrio natriegens strain CCUG 16373]
MKKSAYARKLFLISMEENAPQKVAALEKYIEIGIPVISTDALMEAKPKHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VIFNVPKRLTTDELLSFGQLKGVFYADESLERIGEGLKGIINGQNWLPRNVSSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQNGASNSRMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=187223 BA893_RS14125 WP_014233118.1 3094346..3094990(+) (qstR) [Vibrio natriegens strain CCUG 16373]
ATGAAAAAATCAGCTTACGCCAGAAAGCTATTTCTGATCAGTATGGAAGAGAATGCGCCCCAAAAGGTAGCGGCACTGGA
GAAGTACATCGAGATCGGTATCCCAGTGATCTCGACGGATGCTTTAATGGAAGCGAAGCCTAAACATCGTAATAAAATCT
TACTCATCGATTTCAGTGAACATAAATCGCTTGTTCAGTCGATTAAGAATTTGCCACTGGTGTGGAAAAACTTTGAAACA
GTGATTTTTAATGTCCCAAAACGCCTGACTACGGATGAGCTGCTCTCTTTCGGCCAGCTTAAAGGCGTATTCTATGCCGA
CGAATCGCTTGAACGAATTGGGGAAGGATTAAAAGGCATCATTAATGGCCAAAACTGGTTACCTCGCAATGTGTCCAGCC
AGCTGCTTCACTACTACCGCAATGTGATCAATACGCATACCGCGCCCGCGACCGTGGATCTTACCATTCGGGAACTACAA
GTGTTGCGCTGTCTTCAAAATGGGGCATCCAATAGCCGAATGGCAGAAGAGTTGTTTGTGAGCGAGTTTACGATTAAGTC
TCACCTGTACCAGATTTTTAAAAAGCTCTCGGTGAAAAACCGCGTACAAGCGATTGCTTGGGCTGATCAGAATCTGATGT
CGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

90.187

100

0.902
  qstR Vibrio campbellii strain DS40M4

88.318

100

0.883
  qstR Vibrio cholerae strain A1552

54.419

100

0.547

Multiple sequence alignment