Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BA891_RS15025 Genome accession   NZ_CP016347
Coordinates   3279309..3280832 (-) Length   507 a.a.
NCBI ID   WP_065303045.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16371     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3274309..3285832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA891_RS15005 (BA891_15005) - 3275537..3276523 (+) 987 WP_065303116.1 serine/threonine protein kinase -
  BA891_RS15010 (BA891_15010) - 3276557..3277159 (+) 603 WP_014233398.1 thiol:disulfide interchange protein DsbA/DsbL -
  BA891_RS15015 (BA891_15015) - 3277203..3278081 (-) 879 WP_081281032.1 acyltransferase -
  BA891_RS15020 (BA891_15020) - 3278321..3279277 (+) 957 WP_065303044.1 DUF2860 domain-containing protein -
  BA891_RS15025 (BA891_15025) comM 3279309..3280832 (-) 1524 WP_065303045.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BA891_RS15030 (BA891_15030) ilvG 3281300..3282946 (+) 1647 WP_020333557.1 acetolactate synthase 2 catalytic subunit -
  BA891_RS15035 (BA891_15035) ilvM 3282958..3283242 (+) 285 WP_014233403.1 acetolactate synthase 2 small subunit -
  BA891_RS15040 (BA891_15040) ilvD 3283410..3285251 (+) 1842 WP_020333559.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55128.10 Da        Isoelectric Point: 8.4973

>NTDB_id=187187 BA891_RS15025 WP_065303045.1 3279309..3280832(-) (comM) [Vibrio natriegens strain CCUG 16371]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALAASKFERHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLHKSPKRKTTESHNRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
DEAMETASVASLTQSEINEHNWKIRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTVVVKERVNDARQQMLSRSGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGEDR
IERSHLAEALGYRAMDRLLKQLTAHAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=187187 BA891_RS15025 WP_065303045.1 3279309..3280832(-) (comM) [Vibrio natriegens strain CCUG 16371]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGCGTCGGTGTACAAGCGCCGTCAGTTAGTGTGGAAGTACATATTAGTAA
CGGTATGCCGGGCTTTACTCTGGTCGGGCTGCCAGAAACCACGGTAAAAGAATCGAAAGATCGGGTACGTAGTGCCATTA
TCAATTCCAATTTTCAATTTCCTGCCAAACGCATCACGGTCAACTTAGCTCCGGCGGATCTACCCAAAGAGGGTGGACGC
TTTGACTTACCCATTGCGCTGGGTATTTTGGCCGCTTCAGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAGTTAGCATTGTCTGGAGGCTTAAGGCCAGTAAAAGGGGTGCTACCTGCCGCACTCGCTGCAAGCAAGTTTGAGC
GCCATTTGGTCGTGCCACATGTGAATGGTGATCAGGCAGCGCTGGTGGGTAAAGAACAGCATAAATCCGCTCAGTCGCTG
CTTGAGGTGTGTGCTGAATTGTGTGGTCAACATCGGCTTAATTTGCATAAATCACCTAAGCGTAAAACAACAGAAAGCCA
TAACCGAGATTTACAGGACATCATTGGCCAGCAACAGGGTAAGCGAGCGCTTGAGATTGCTGCAGCAGGAAACCATAACT
TACTTTTCCTTGGCCCGCCGGGAACAGGAAAAACCATGTTAGCGTCGCGCTTATGCGATTTGTTACCTGAAATGAGTGAT
GATGAAGCGATGGAAACAGCATCCGTCGCGTCATTAACACAAAGCGAAATCAATGAGCATAACTGGAAGATACGGCCGTT
TCGTTCTCCACACCACTCCAGTTCGATGGCGGCTTTAGTCGGCGGAGGTTCGGTTCCGAGGCCGGGAGAAATTTCTCTGG
CTCACAATGGCTTGTTGTTTCTGGATGAAATGCCGGAGTTCGATCGTAAGGTGCTGGATTCGTTGCGAGAACCGCTGGAG
TCGGGCGAAATCATCATCTCTCGGGCTCAGGGCAAAACCCGATTTCCTGCCCGCTTTCAGCTGGTGGGCGCTCTCAACCC
CAGTCCGACAGGTTATTACGAAGGCAACCAGGCTCGTACCAATCCACAAGCCATTCTGCGTTATTTAGGTCGTCTGTCGG
GACCGCTACTGGATCGATTCGATATGTCTCTGGAAATTCCGGCGTTGCCAAAGGGCACATTATCTGAGGGTGGGGATCGA
GGTGAGCCAACAGTGGTTGTGAAAGAGCGCGTGAATGACGCACGTCAGCAAATGTTAAGTCGCAGCGGTAAGGTAAACGC
TTTGCTGGGTAGTCGTGAGATAGAAGCGTTTTGCCCGTTACAAAAAAGTGATGCAGAGTTTCTGGAGACAGCTTTACATA
GACTGGGACTGTCCATTCGTGCGTATCACCGAATCATTAAAGTTGCCCGCACTATTGCTGATCTCGACGGGGAAGATCGA
ATTGAGCGCTCCCATCTGGCGGAAGCCCTTGGATATCGAGCAATGGACCGATTACTGAAACAGCTTACTGCTCACGCTGT
GTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

93.491

100

0.935
  comM Vibrio cholerae strain A1552

84.615

100

0.846
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

64.822

99.803

0.647
  comM Legionella pneumophila str. Paris

49.395

97.83

0.483
  comM Legionella pneumophila strain ERS1305867

49.395

97.83

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.401

100

0.446

Multiple sequence alignment