Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BA891_RS13250 Genome accession   NZ_CP016347
Coordinates   2913353..2913892 (-) Length   179 a.a.
NCBI ID   WP_065302931.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16371     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2908353..2918892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA891_RS13230 (BA891_13230) - 2908677..2909009 (-) 333 WP_020334514.1 hypothetical protein -
  BA891_RS13235 (BA891_13235) gspM 2909002..2909652 (-) 651 WP_065297433.1 type II secretion system protein GspM -
  BA891_RS13240 (BA891_13240) - 2909649..2911094 (-) 1446 WP_065302930.1 MSHA biogenesis protein MshI -
  BA891_RS13245 (BA891_13245) csrD 2911106..2913115 (-) 2010 WP_065297434.1 RNase E specificity factor CsrD -
  BA891_RS13250 (BA891_13250) ssb 2913353..2913892 (-) 540 WP_065302931.1 single-stranded DNA-binding protein Machinery gene
  BA891_RS13255 (BA891_13255) qstR 2914170..2914814 (+) 645 WP_065302932.1 LuxR C-terminal-related transcriptional regulator Regulator
  BA891_RS13260 (BA891_13260) galU 2914994..2915866 (+) 873 WP_014233119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  BA891_RS13265 (BA891_13265) uvrA 2916015..2918837 (+) 2823 WP_065302933.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19627.79 Da        Isoelectric Point: 5.8987

>NTDB_id=187177 BA891_RS13250 WP_065302931.1 2913353..2913892(-) (ssb) [Vibrio natriegens strain CCUG 16371]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQGRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQAPQQGGWGQPQQPAQPQYNAPQQQAPKQSAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=187177 BA891_RS13250 WP_065302931.1 2913353..2913892(-) (ssb) [Vibrio natriegens strain CCUG 16371]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAACCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCAACCTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACTG
AGTGGCACCGAGTTGTGCTGTTTGGCAAACTTGCGGAAGTTGCTGGCGAATACCTTCGTAAAGGCTCACAAGTTTACGTT
GAAGGACAACTTCAAACGCGTAAATGGCAAGATCAGAGTGGTCAAGGCCGTTACTCAACTGAAGTTGTGGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTGGGTGGTCGCGCTCAAGGTGGCGCTCCTGCTATGGGTGGCCAGGCACCTCAGCAAGGTG
GTTGGGGTCAGCCTCAGCAACCAGCTCAGCCGCAATACAATGCGCCTCAGCAACAAGCTCCAAAGCAATCGGCTCCACAA
CAGCCTCAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.781

100

0.816
  ssb Glaesserella parasuis strain SC1401

56.085

100

0.592
  ssb Neisseria meningitidis MC58

46.667

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.469

Multiple sequence alignment