Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   BA891_RS13255 Genome accession   NZ_CP016347
Coordinates   2914170..2914814 (+) Length   214 a.a.
NCBI ID   WP_065302932.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16371     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2909170..2919814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA891_RS13240 (BA891_13240) - 2909649..2911094 (-) 1446 WP_065302930.1 MSHA biogenesis protein MshI -
  BA891_RS13245 (BA891_13245) csrD 2911106..2913115 (-) 2010 WP_065297434.1 RNase E specificity factor CsrD -
  BA891_RS13250 (BA891_13250) ssb 2913353..2913892 (-) 540 WP_065302931.1 single-stranded DNA-binding protein Machinery gene
  BA891_RS13255 (BA891_13255) qstR 2914170..2914814 (+) 645 WP_065302932.1 LuxR C-terminal-related transcriptional regulator Regulator
  BA891_RS13260 (BA891_13260) galU 2914994..2915866 (+) 873 WP_014233119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  BA891_RS13265 (BA891_13265) uvrA 2916015..2918837 (+) 2823 WP_065302933.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24473.49 Da        Isoelectric Point: 9.9863

>NTDB_id=187178 BA891_RS13255 WP_065302932.1 2914170..2914814(+) (qstR) [Vibrio natriegens strain CCUG 16371]
MKKSAYARKLFLISMEENAPQKVAALEKYIEIGIPVISTDALMEAKPKHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VIFNVPKRLTTDELLSFGQLKGVFYAEESLERIGEGLKGIINGQNWLPRNVSSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQNGASNSRMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=187178 BA891_RS13255 WP_065302932.1 2914170..2914814(+) (qstR) [Vibrio natriegens strain CCUG 16371]
ATGAAAAAGTCAGCTTACGCCAGAAAGCTATTTCTAATCAGTATGGAAGAGAATGCGCCCCAAAAGGTAGCGGCACTGGA
GAAGTACATCGAGATCGGCATCCCAGTGATCTCGACGGATGCTTTAATGGAAGCGAAGCCGAAACATCGTAATAAAATCT
TACTCATCGATTTCAGTGAACATAAATCGCTTGTTCAGTCGATTAAGAACTTGCCACTGGTATGGAAAAACTTTGAAACA
GTGATTTTTAATGTCCCAAAACGCCTGACTACGGATGAGCTGCTCTCTTTCGGCCAACTTAAAGGCGTATTCTATGCTGA
AGAATCGCTTGAACGAATTGGGGAAGGATTAAAAGGCATCATTAATGGCCAAAACTGGTTACCTCGCAATGTGTCCAGCC
AGCTGCTTCACTACTACCGCAATGTGATCAATACGCATACCGCACCCGCGACCGTGGATCTTACCATTCGGGAATTACAA
GTGTTGCGCTGCCTTCAAAATGGGGCATCCAATAGCCGAATGGCAGAAGAGTTATTTGTGAGCGAGTTTACGATTAAGTC
TCACCTGTACCAGATTTTTAAAAAGCTCTCGGTGAAAAACCGCGTACAAGCGATTGCTTGGGCTGATCAGAATCTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

90.654

100

0.907
  qstR Vibrio campbellii strain DS40M4

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

54.419

100

0.547

Multiple sequence alignment